Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5976g00003 ATGCATGGACGTGGAGGTGAGAAGGGCACTCGGCACATGTGGAAAGCCCCCGCACTTGGCAACTCGTCTCTGAACGCCGATGTTTCTTCGTCTTCTTCTTCATCGTCAGTGAAGTCTTTCTTTAAGGACCGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCTTCTGAAGATCGCCCACCATATATTGGTATAATTCGTTATCTGACAATTGGCAAAGATAAAAAATTGAAGTTTGGTGTTAGTTGGCTCTATCGATCAATTGAAGTGAAACTCAGCAAGAGCGTGCCTTTGGAGGCTGCTCCAAACGAAATCTTCTACACCTTCCATAAGGATGAGATTGATGCTGAAGCTCTGCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGGGCAGAACTTCAACCAGGGATTTCTTCATTTTTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATAAACTATTATACAGGAATTGTGTAGAAATGCATGCAACAGTGCAGCCAGGTGGCCGTTCTCCTAAGCCTATGAGTAGTCCAACTTCAACATCTCAGTTAAAATCTGCTTCAGATAGTGTCCAGAATAGTACTTCTTCCTTTCCTTCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGTCAGCCAAGCGAGAACGATCAATAAAAACTGAGGATGGGGATTCTGGTAATTTCAAGCATGATAACATTTTCAAGACAGAGATTGCAAAAATTACTGAGAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGTAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAGATTGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTTGTTGCAGCAACAGATAAGTTAGATTGTCTTAGTCAGTTTGTGCAGCAAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGCGACAGTGATAAATCTGCTGAGGAATTTCTGTTGGTATTGCTACGGGCACTTGATAAACTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAAGTCACAAAAACGCTGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGATACATGGAAGAAACGAGTTGAAGCTGAAATGAATATAAATGATGCAAAGTCTGGTTCAGGTACCAATGTCCACTGGCCTGCCAAATCACGTCCTTCTGATGTTGGTCAAGGTGGGAATAGACACTCAGGTGCATCATCAGATGTTGCCATGAAGAGTTCAGTTACCCAGCTTTCTGCTTCCAAGACCACCTCTGTGAAGATTGTCCAGGGAGAGAATATTACCAGATCTGCATCAACATCTGCATTTCCAGGGCCTGCAAAATCAGTGCCGTCACCTGCAGCTGCTACTGCAAATTTAAAAGATGGGCAGCCTCGTATTGTTGCTGTCAATGGAGGTTCTGATCCTCCCATGGCAAATGCAAGGGATGAGAAAAGTTGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGTGACCATGCTAAAACTGGAGGTCACTCAGTAAAGGAAGATGCCAGAAGCTCTACTGCAATGAGTGCCAATAAGATTTCTGGAGGCTCTTCACGGCATCGAAAATCCATTAATGGATTTTCAGGTTCATCTCCATCTGGGGGGCAAAGGGAAACCGGATCAAGCAAGAATTCCTCCTTGCACAAAAATTTAACTTCAGAAAAAATATCTCAACCTGGATTAATGGATAAAGCAGTTGATGGAACTTCTCTTGAGGGCAATATTCCAAAGCTGATTGTTAAAATTCCAAATCAAGGTAGAAGTCCTGCACAAAGTGTCAGCGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCTTCATCTCCTGTTCTTCCTGAGAAGCATGATCAGTCTGATCACAGCCCAAATGAAAAGAGCGACCTTTATCGAGTAAATATTGGTTCAGATATTAATACTGAATCTTGGCAGAGTAATGACTTTAAAGAGGTATTGACTGGCTCTGATGAGGGTGATGGATCACCTGCTGCAGTTACTGATGAAGAGCACTGTCGGACTGGCAATGATTGTAAGAAGGCATTGGAAGTATCAAAAGCTGCTTCATCATCATCTGGAAATGAAAATAAAGCTGGCAATTTGCAGGATGCTTCTTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGGTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATATTGAAATCTGAATTGTTAACTCCAACTGGATCTCCAGAAAGAAATACAGCTGCTGTTGAACAGTCATGCACAGACAATGGTGTTAAGTCCTCTGAAGAAAATCTTGTTCGTGATGAATGTCACTCAAATGATGCTCTTGATGTTGAACATAAGAATCTGGCCTCTGTAACAGGTGATCTAGGGGCAAATGGTGAAAGCGATTCTGATTTTCAAGCTTCAGGAGGAAAAACTGCAAGAGAGCTAAATAAGCGTGTTGATGCATGTAATATGGATTTACAACAGGTTGCTGAAACTACTTTGGAAAGCAAAGGAAAATTAAATGAAAAATCTGGACCTACTTCTCTGGGTGGCCTTGCTGAAAATTGTGTACAAGAAGCTGGAGATGGTGATGGAAGCAAGCAACTACAGGAGGTTGTTCAGGGAGTCAATGCTGGCGAAATTCATGATAAAATCAATTGCGTTGCTGAAGTTGAGGCAGAAGCAGCTAAAAAATTGTCACATACAGCTGCGGAAGTGGATGTTCAGAGTGATAACTATACTGCTGAAGGATCAAGTGGCAGTGGACAGACAGTTAAAAATCCTCCTGCTGTACTTGTTCAGTCTGATTTGGCAAGAGGAAAAGATGATAAAGCGCTCCATTCTTCTGGTTATAGTGTTGACAAGGTTCTTAAAGACTTCCCTGAACGGGAATCTGACAAAATTGATGATGTTGATGCTGAGAATCATGTCAATCAGTGTAGAAGTAAAAGAAGTGAGTCTGAAAGTGACACCTTGACCATGCCTGAGAATAGAGGTATATGTTCTATTGTGACTGGTCTTGTTGCTGAACATGTAGAGGAGAATTTAGAAACGAGAGATGTTCGTGACCAACCTTCTAGAGAGGATCTTCCTGAAGACTCACCTAGTGTTCTTTCACAAGAAATCGATAAGCATCTCAATTCTAAAAGGTTGAAATTGACTTCCTCAGAAGCAGAGGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCCATGTCTGCTGCAGCTGTGTCAGATGCGGATGCAAAGGTTGAATTTGATTTAAATGAAGGGCTCAATGCAGATGATGGAAGATGTGAGTTCAACAGCATTGCCAATTCAGGATGTGCACCTTCTGGTCGATTGATCAGTCCTGTTCCATTTCCTGCTTCATCTATGTCTTGTGGTATTCTTGCCCCAGTCACTGTGGCGTCTGCTGCTAAGGGGCACTTTGTGCCTCCCGAAGATTTATTGAGAAGTAAAGGTGAAATTGGTTGGAAGGGATCAGCTGCCACCAGTGCATTCAGGCCAGCTGAACCCAGGAAAGTTATGGAAATGCCTCTTGGTACATCAACTACCCCTATTCCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTGAATGTGGCCGATGAAAGAATACTTGATGACATTTCTTGTGCTCGACACACAAATTCTATATCTCTTGCAACTGATAGTCATGATCCTGTATGCAGTAAAATACCTTCACCTGTCCGCAGCTCTGGAGGGCTTGGTCTTGACTTAAACCAAGTGGATGATGCTTCCGACATGGGCATTTGCTTGAACAGTAATCATAAAATTGATGTGCCAATTATGCAGGGGAAATCATCATTGGGTGGTCCACCAATTAGAGAAGTGAATGCCCACAGGGACTTTGATTTGAACAACGGACCTTCTGTGGATGAAATGACCACCGAATCCTCATTGTTCTCTCAGCACTCCCGGAGCAATGTGCCATCTCAATTACCTGTTTCTGGACATAGAATGACTACTGCTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCTCCAAATGGGCCACAAAGGTTGTTGACTCCTGCTGCTGGTGGCAACCCATTTGGACCTGATATTTATAGGGCCCCAGTATTGTCATCTTCTCCTGCAGTGTCATATCCATCTGCTCCATTTGAATATCCCGTCTTCCCCTTTAACTCCAGCTTCCCTCTTCCATCAGCTTCTTTTTCTGCTGGGTCAACTACTTACGTATATCCAACATCAGCCAATCGGCTTTGCTTCCCTGCAGTAAATTCACAGTTAATGGGGCCTGCTGCCACAGTTTCATCTCATTACCCCAGGCCCTATGTTGTTGGTCTTCCAGAAGGTAACAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGCTGTTCAGACATGGAGGGGAGAGATGAGAGTTTGCCTCTTCCATCTAGGCAACTTTCTGTTGCTAGTTCAAAGGCCTTAGCTGAGGAGCAAGCGAGGATCCAGCTTGCCGGTAGTGTTCGGAAGAGGAAGGAGCCTGATGGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 4848 0.4336 MHGRGGEKGTRHMWKAPALGNSSLNADVSSSSSSSSVKSFFKDRRKISVGECALFKPSEDRPPYIGIIRYLTIGKDKKLKFGVSWLYRSIEVKLSKSVPLEAAPNEIFYTFHKDEIDAEALLHPCKVAFLPKGAELQPGISSFLCRRVYDIANKCLWWLNDQDYINDCQEEVDKLLYRNCVEMHATVQPGGRSPKPMSSPTSTSQLKSASDSVQNSTSSFPSHIKGRKRERADQGSESAKRERSIKTEDGDSGNFKHDNIFKTEIAKITEKGGLVDGEGVVKLVQLMVPDRNEKKIDLASRSLLAAVVAATDKLDCLSQFVQQRGLPVFDEWLQEVHKGKIGDSDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRSHKNAEIQRKARGLVDTWKKRVEAEMNINDAKSGSGTNVHWPAKSRPSDVGQGGNRHSGASSDVAMKSSVTQLSASKTTSVKIVQGENITRSASTSAFPGPAKSVPSPAAATANLKDGQPRIVAVNGGSDPPMANARDEKSCSSSQSHNNSQSCSSDHAKTGGHSVKEDARSSTAMSANKISGGSSRHRKSINGFSGSSPSGGQRETGSSKNSSLHKNLTSEKISQPGLMDKAVDGTSLEGNIPKLIVKIPNQGRSPAQSVSAGSFDDPTIMNSRASSPVLPEKHDQSDHSPNEKSDLYRVNIGSDINTESWQSNDFKEVLTGSDEGDGSPAAVTDEEHCRTGNDCKKALEVSKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDGGMNLLASVAAGEILKSELLTPTGSPERNTAAVEQSCTDNGVKSSEENLVRDECHSNDALDVEHKNLASVTGDLGANGESDSDFQASGGKTARELNKRVDACNMDLQQVAETTLESKGKLNEKSGPTSLGGLAENCVQEAGDGDGSKQLQEVVQGVNAGEIHDKINCVAEVEAEAAKKLSHTAAEVDVQSDNYTAEGSSGSGQTVKNPPAVLVQSDLARGKDDKALHSSGYSVDKVLKDFPERESDKIDDVDAENHVNQCRSKRSESESDTLTMPENRGICSIVTGLVAEHVEENLETRDVRDQPSREDLPEDSPSVLSQEIDKHLNSKRLKLTSSEAEEAEECTSTTADASSMSAAAVSDADAKVEFDLNEGLNADDGRCEFNSIANSGCAPSGRLISPVPFPASSMSCGILAPVTVASAAKGHFVPPEDLLRSKGEIGWKGSAATSAFRPAEPRKVMEMPLGTSTTPIPDAPAGKQSRAPLDIDLNVADERILDDISCARHTNSISLATDSHDPVCSKIPSPVRSSGGLGLDLNQVDDASDMGICLNSNHKIDVPIMQGKSSLGGPPIREVNAHRDFDLNNGPSVDEMTTESSLFSQHSRSNVPSQLPVSGHRMTTAEPGNFSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPAAGGNPFGPDIYRAPVLSSSPAVSYPSAPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSANRLCFPAVNSQLMGPAATVSSHYPRPYVVGLPEGNNSGSAETSRKWTRQGLDLNAGPGCSDMEGRDESLPLPSRQLSVASSKALAEEQARIQLAGSVRKRKEPDGGWDGYNQSSWQ 1615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 702 724 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 550 607 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 632 680 - -
Vium5976g00003 1615 Coils Coil 865 885 - -
Vium5976g00003 1615 ProSiteProfiles TFIIS N-terminal domain profile. 327 407 IPR017923 -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 192 222 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 635 663 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 795 817 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 410 445 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 1534 1548 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 1096 1112 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 1069 1125 - -
Vium5976g00003 1615 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 417 IPR035441 -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 1069 1083 - -
Vium5976g00003 1615 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 281 408 IPR035441 -
Vium5976g00003 1615 Pfam BAH domain 46 153 IPR001025 GO:0003682
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 474 618 - -
Vium5976g00003 1615 SMART BAH_4 45 160 IPR001025 GO:0003682
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 1533 1572 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 793 817 - -
Vium5976g00003 1615 Pfam TFIIS helical bundle-like domain 355 404 IPR017923 -
Vium5976g00003 1615 SMART TFS2_5 333 406 IPR003617 GO:0005634
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 187 253 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 520 542 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 1592 1615 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 223 253 - -
Vium5976g00003 1615 ProSiteProfiles BAH domain profile. 45 160 IPR001025 GO:0003682
Vium5976g00003 1615 CDD TFIIS_I 337 405 - -
Vium5976g00003 1615 MobiDBLite consensus disorder prediction 664 678 - -
Vium5976g00003 1615 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1615 - -
Vium5976g00003 1615 Gene3D - 26 270 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5976g00003 Vium-Chr5976 25069 31613 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium5976g00003 BAH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5976g00003 - - gmx:100788512 2571.19