Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5972g00003 ATGGCAGAACTCAACCACACATTGCTTGTCATTTTCCTCTCTCTCTTCTTCTCATTTCTTTCCACCCCAGTTGAGCCATCACCTTTGACAAGGCACAGAAACCCTAAGGCAATGACCTACATAGAGTCCTCTTGCAAAGGCACCCTCTACCCTAATCTATGCATCCGTTGTCTTTCCCAATATGCCAAATCCCACTTAAATGGCCCACAACACTTGGCACAATATGCCCTGTCAGTGAGCCTCTCTAGGGCACTGCACACAAAAGGGTACCTTTTGCAAGTGGCAAAGGAGCTTCAAGCCATCAAGAGAAACAAAAGAGAGTACCTAACAGTGCAAGATTGTGTGAACCAAATAACTGATAGTGTGGAACAAATTAACCAAGCCATGAAAGAACTGCGTAGCTTCAACAAACATGATTCAAGCATGAATGATAACATGTGGCACATAAGCAATGTTGAGACATGGGTGAGCACAGCTTTGACAGATGCCAGTAGTTGTGTGTACTCATTTCCTGGGAATAGAATGAGTAAGAGAGTTGCTGCTATTAAGCTTAAGGCCAAGAATGTTGCAGAAGTTACAAGTAATGCTCTTTTCTTGTTCCATAGATATGCATCTACCTTCCAGAAAGCCACAATGAACACCAGTAATTCCTAA 654 0.4297 MAELNHTLLVIFLSLFFSFLSTPVEPSPLTRHRNPKAMTYIESSCKGTLYPNLCIRCLSQYAKSHLNGPQHLAQYALSVSLSRALHTKGYLLQVAKELQAIKRNKREYLTVQDCVNQITDSVEQINQAMKELRSFNKHDSSMNDNMWHISNVETWVSTALTDASSCVYSFPGNRMSKRVAAIKLKAKNVAEVTSNALFLFHRYASTFQKATMNTSNS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5972g00003 217 CDD PMEI-like_3 43 205 - -
Vium5972g00003 217 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 203 IPR035513 -
Vium5972g00003 217 NCBIfam pectinesterase inhibitor domain 6 202 IPR006501 GO:0004857
Vium5972g00003 217 FunFam Pectinesterase inhibitor 3 36 204 - -
Vium5972g00003 217 SMART PMEI_2 36 199 IPR006501 GO:0004857
Vium5972g00003 217 PANTHER PECTINESTERASE INHIBITOR-LIKE 8 198 - -
Vium5972g00003 217 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 203 IPR035513 -
Vium5972g00003 217 Pfam Plant invertase/pectin methylesterase inhibitor 40 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5972g00003 Vium-Chr5972 58168 59043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5972g00003 41 206 Carbohydrate Esterase AT1G53830 23.669 5.82e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5972g00003 - - gmx:100791798 320.472