Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5958g00006 ATGCTTGTCATGCTGTGTAGCTTTTATGCAGCAGAGGTTCTGCTGGCACTTGAATATCTTCACATGCTTGGAGTGGTGTACAGAGACCTTAAACCTGAAAACGTACTGGTCCGAGATGATGGTCACATAATGCTCTCAGACTTCGATCTTTCTCTCAGATGTGCTGTTTCACCTACCCTTATAAGAAATATTGACGGGGATCCCTCCAAACGAGCTGGTGGCGCATTCTGTGTGCAGCCGGCTTGTATCGAGCCTTCATCGGTATGCATCCAGCCTTCATGTTTCATGCCTCGCCTTTTTGCTCAGAAAAATAAGAAGTCACGGATGCCTAAAGCAGATCCAGGCCTGCAATCTAGCACACTTCCTGAGCTTGTTGCAGAACCAACAACTGCTCGGTCCATGTCTTTTGTGGGCACTCACGAATACCTTGCTCCCGAAATCATCAAAGGAGAAGGTCATGGAAGTGCTGTCGATTGGTGGACATTTGGGATTTTCTTGCATGAACTATTATACGGTAAAACCCCTTTCAAAGGCTCAGGAAACCGCGCGACCCTTTTCAACGTAGTAGGCCAGCAGCTCAGATTTCCGGAGTCACCGGCCACCAGTTATGCGAGCCGTGATCTCATCCGCTGCCTGCTGGTGAAGGAGCCGCAGCACCGGCTGGGAGTGAAGAGGGGTGCGACTGAGATCAAACAGCACCCGTTCTTTGAAGGCGTGAACTGGGCGTTGATCAGGTGCAGCACTCCACCAGAAGTTCCAAGAGCAGTTGAATGTGATGTTGTAGCAGCAAAGTTTGAAGCAGTTGATAGTGTTGGGGTTGGCATGAACAATAGTAGTAAGAGGATGGGAGGTAATAATGAGATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 903 0.4873 MLVMLCSFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRNIDGDPSKRAGGAFCVQPACIEPSSVCIQPSCFMPRLFAQKNKKSRMPKADPGLQSSTLPELVAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRCLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRAVECDVVAAKFEAVDSVGVGMNNSSKRMGGNNEMKSGGKYLDFEFF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5958g00006 300 Gene3D Transferase(Phosphotransferase) domain 1 131 254 - -
Vium5958g00006 300 Gene3D Transferase(Phosphotransferase) domain 1 6 52 - -
Vium5958g00006 300 ProSiteProfiles Protein kinase domain profile. 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00006 300 SMART serkin_6 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00006 300 FunFam serine/threonine-protein kinase D6PK-like 131 254 - -
Vium5958g00006 300 PANTHER FLIPPASE KINASE 1-RELATED 7 259 - -
Vium5958g00006 300 SUPERFAMILY Protein kinase-like (PK-like) 6 261 IPR011009 -
Vium5958g00006 300 Pfam Protein kinase domain 6 54 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00006 300 Pfam Protein kinase domain 133 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00006 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Vium5958g00006 300 FunFam Serine/threonine-protein kinase OXI1 3 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5958g00006 Vium-Chr5958 91003 92222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5958g00006 8 300 AGC Kinase Gene Family AT2G44830 76.066 1.61e-154 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium5958g00006 Pkinase 2.3e-20 CL0016