Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5958g00004 ATGGAGAGGGTTGCAGAGCCAAAGGTACTTCCTCGGTCTTTGCCTGTTCTGGTTGAGGTATCTAATGCGCACACTGCTGCAATGAGAGAAGCTGGTCAAAGACTAAATGCGCAGGATGTTTCGGGTGTGCGAGGGATTCCATCAAGAGAAGGGAATCAGTTTTCAAAGTCACGAGATGGCCCCATGACACGTCTTGCCTCCATCAGAGAAGTGGCTCAGTTATCAAATGCACGAATAGTTTTGGTTAGAGAGGATATGGGGTTCGATACACGGTCCTGTCAAGAGCCTCCCTCCCCTGTTCCTACAAGAACGTGGAAAGGAAAGAGCTCTTTACCTGAAGCCGTAGAACTTGTGCCTGATATTCAGACATTGAAGGGTAGCAATGATTCTTTTGGGGAAACTGGTCCAAGTTCATTTGCTGGTGCAAGTCATCCCCCAGAACCTGTTGATACTGATCTTATGAGAACGGTTTATGTGCCAATAGGTCAAACCAAATCCGAGGCAGCATGTTTGATGAAGAGTGTGTCCTTGAAGGGTTCTGGTCCTTTCTTAGAAGATCTTTCAATTTGTGTTCCTGCCAAGAAACAAAGCATGGCTGTTGTTTCTCCTGCAGAAAGCCTGGTTGATGAGTCAAATGTGACGCATAACATACCCTCGCCACTTTCGGGTGCTCGTGCATCTCAGAATACCGAGAACTCTCCTACTGCTCCAGATTCTGAGGAGAAAGAATGTGTTTGGGATGCATCTTTGCCTCCAAGTGGTAATGTTAGTCCCCTTAGTAGTATTGATAGTACTAGTGTTGTCAGAACAATGAGCATCGTTAATAGTTGTGCAAGTACATACCGGAGTGATGCAGTCACTAGTGATGGCATGCTTAGTTTGGACAGGAATTGTGATAGCACTAAAGGAAGTGTTAGAGGGGATTCACTGGAGAGTGCAAAAACTAGTGCTAGCCGAGCAAGTGATAGCAGTGGCCTCAGTGATGACAGCAACTGGAGTAACATAACTGGCAGTGCCAACAAGCCACACAAAGGAAATGATCCTAGATGGAAGGCTATCCTTGCCATCCGAGCACGGGACGGAATTCTTGGCATGAGTCACTTCAGGTTACTCAAACGACTTGGTTGTGGTGATATTGGAAGTGTTTATCTCTCAGATCTTAGTGCAACTCGATGCTTTTTTGCAATGAAAGTTATGGACAAGGCATCCTTAGCAAGCAGAAATAAGCTGACTAGGGCTCAGACAGAAAGAGAGATATTGCAGTTGCTGGATCATCCATTTCTGCCTACTTTGTATACACATTTTGAGACCGACAGATTCTGCTGTTTGGTAATGGAATACTGTCCAGGGGGTGATCTTCACACCTTAAGGCAAAGACAACCTGGGAAACATTTCTTGGAGTATGCTGCACGCTTTTATGCAGCAGAGGTTCTGCTGGCACTTGAATATCTTCACATGCTTGGAGTGGTGTACAGAGACCTTAAACCTGAAAACGTACTGGTCCGAGATGATGGTCACATAATGCTCTCAGACTTCGATCTTTCTCTCAGATGTGCTGTTTCACCTACCCTTATAAGAAATATTGACGGGGATCCCTCCAAACGAGCTGGTGGCGCATTCTGTGTGCAGCCGGCTTGTATCGAGCCTTCATCGGTATGCATCCAGCCTTCATGTTTCATGCCTCGCCTTTTTGCTCAGAAAAATAAGAAGTCACGGAGGCCTAAAGCAGATCCAGGCCTGCAATCCAGCACACTTCCTGAGCTTGTTGCAGAACCAACAACTGCTCGGTCCATGTCTTTTGTGGGCACTCACGAATACCTTGCTCCCGAAATCATCAAAGGAGAAGGTCATGGAAGTGCTGTCGATTGGTGGACATTTGGGATTTTCTTGCATGAACTATTATACGGTAAAACCCCTTTCAAAGGCTCAGGAAACCGCGCGACCCTTTTCAACGTAGTAGGCCAGCAGCTCAGATTTCCGGAGTCACCGGCCACCAGTTATGCGAGCCGTGATCTCATCCGCTGCCTGCTGGTGAAGGAGCCGCAGCACCGGCTGGGAGTGAAGAGGGGTGCGACTGAGATCAAACAGCACCCGTTCTTTGAAGGCGTGAACTGGGCGTTGATCAGGTGCAGCACTCCACCAGAAGTTCCAAGAGCAGTTGAATGTGATGTTGTAGCAGCAAAGTTTGAAGCAGTTGATAGTGTTGGGGTTGGCATGAACAATAGTAGTAAGAGGATGGGAGGTAATAATGAGATGAAGTCTGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2295 0.4702 MERVAEPKVLPRSLPVLVEVSNAHTAAMREAGQRLNAQDVSGVRGIPSREGNQFSKSRDGPMTRLASIREVAQLSNARIVLVREDMGFDTRSCQEPPSPVPTRTWKGKSSLPEAVELVPDIQTLKGSNDSFGETGPSSFAGASHPPEPVDTDLMRTVYVPIGQTKSEAACLMKSVSLKGSGPFLEDLSICVPAKKQSMAVVSPAESLVDESNVTHNIPSPLSGARASQNTENSPTAPDSEEKECVWDASLPPSGNVSPLSSIDSTSVVRTMSIVNSCASTYRSDAVTSDGMLSLDRNCDSTKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSDLSATRCFFAMKVMDKASLASRNKLTRAQTEREILQLLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFLEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRNIDGDPSKRAGGAFCVQPACIEPSSVCIQPSCFMPRLFAQKNKKSRRPKADPGLQSSTLPELVAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRCLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRAVECDVVAAKFEAVDSVGVGMNNSSKRMGGNNEMKSGGKYLDFEFF 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5958g00004 764 ProSiteProfiles Protein kinase domain profile. 368 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00004 764 MobiDBLite consensus disorder prediction 296 345 - -
Vium5958g00004 764 SMART serkin_6 368 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00004 764 FunFam serine/threonine-protein kinase D6PK-like 595 718 - -
Vium5958g00004 764 Gene3D Transferase(Phosphotransferase) domain 1 595 718 - -
Vium5958g00004 764 FunFam serine/threonine-protein kinase D6PK-like 452 519 - -
Vium5958g00004 764 Gene3D Transferase(Phosphotransferase) domain 1 452 519 - -
Vium5958g00004 764 FunFam Serine/threonine-protein kinase D6PK-like 366 451 - -
Vium5958g00004 764 PANTHER FLIPPASE KINASE 1-RELATED 144 723 - -
Vium5958g00004 764 CDD STKc_phototropin_like 366 718 - -
Vium5958g00004 764 Gene3D Phosphorylase Kinase; domain 1 366 451 - -
Vium5958g00004 764 MobiDBLite consensus disorder prediction 296 341 - -
Vium5958g00004 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Vium5958g00004 764 MobiDBLite consensus disorder prediction 208 262 - -
Vium5958g00004 764 Pfam Protein kinase domain 597 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00004 764 Pfam Protein kinase domain 369 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5958g00004 764 MobiDBLite consensus disorder prediction 127 147 - -
Vium5958g00004 764 SUPERFAMILY Protein kinase-like (PK-like) 350 718 IPR011009 -
Vium5958g00004 764 MobiDBLite consensus disorder prediction 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5958g00004 Vium-Chr5958 86684 95396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5958g00004 1 764 AGC Kinase Gene Family AT2G44830 65.863 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium5958g00004 Pkinase 8.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5958g00004 - - gmx:100800019 1371.3