Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5956g00002 ATGAAAACAATCTTGGATGATAGAGACGAAGTTGGGGAACAGCATGCTAAGGAGATAACAAGTAACCTGGATTGGAAATCTCTAGAGAGAGATTTATATTTGAAGGGTATAGAAGTGTTTGGAAAAAACAGTTGCCTTATTACTCGAAACTTACTTTCTGGCTTGAAGACTTGCTCGGAAGTAGCTAGTTACATGTTGGCTGAGGAGGAGTCAATGCTCCATGGATCCATGCCACTTACAAATGCAAATAACGATGATCAGGCTAATGCAGAGAGCACGGACGAAGAGACGCCAAGATCACAGTTGCAGCGGAAAAGGGGGAAATATTCTCGAAAATGTGGTGGACTCTCAGCTAGATGGAGAAAAAAGGGTGATGGGCAAAAACGAAGTAATACACAGTATACTCCTTGTAGGTGTCAAGGAATCTGCACAAAGGAATGCACTTGTCATCGTCACGGTACTCGTTGTGAAAAATATTGTGGGTGTTCAAAGTTTTGCAGAAACCGGTTCCGAGGATGTTATTGTTCCAAGAGTCAATGCAGAAGTAAACTATGCCCATGCTTTGCAATCAACCGTGAATGTGACCCAGATATTTGTCGAAATTGTTGGGTTGGTTGCAACGATGGTTCACCAGGGGAGCTAGCCGGGGGTGGAAATGGTCATTGTGGAAATATGGATCTTCTTTTGGGGAAAAAAGAGAGGATTCTTTTGGCAAAGTCAAATGTTGTAGGATGGGGAGTTTTTGCAAAGAACCCAATTAATAAAGATGCTTGTCTCGGAGAATACACAGGTGAACTAATCACTCACAAAGAAGCGGAAAAACGTGGAAAACTATATAATCGAATAAATCACTCATTTCTTTTTGACCTCAATGATAAGTGGGTTATTGATGCTCGTCGCTATGGAGACAAGTTAAAATTTGCAAACCACTCATCAAAACCTAATTGTTATGCGAAGGTGATGTTTGTTGGAGGAGATCATAGAGTTGGCATATATGCCAAGGAAAATATCAAAGTTGGTGATGAGATTTTCTATGATTATTTCTACAAAAAAGAATGTGCACCATCATGGGCACGTCCATCTGATTATGAGGCTTCTAATGAACATGGATCAGCTGTTTCACAACACAAGGCAAAGGAAGAAAGAAATAAGAAGTCACTTAAGTGA 1167 0.4053 MKTILDDRDEVGEQHAKEITSNLDWKSLERDLYLKGIEVFGKNSCLITRNLLSGLKTCSEVASYMLAEEESMLHGSMPLTNANNDDQANAESTDEETPRSQLQRKRGKYSRKCGGLSARWRKKGDGQKRSNTQYTPCRCQGICTKECTCHRHGTRCEKYCGCSKFCRNRFRGCYCSKSQCRSKLCPCFAINRECDPDICRNCWVGCNDGSPGELAGGGNGHCGNMDLLLGKKERILLAKSNVVGWGVFAKNPINKDACLGEYTGELITHKEAEKRGKLYNRINHSFLFDLNDKWVIDARRYGDKLKFANHSSKPNCYAKVMFVGGDHRVGIYAKENIKVGDEIFYDYFYKKECAPSWARPSDYEASNEHGSAVSQHKAKEERNKKSLK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5956g00002 388 Gene3D SET domain 134 349 IPR046341 -
Vium5956g00002 388 CDD SET_EZH 233 349 - -
Vium5956g00002 388 SMART CXC_2 168 205 IPR033467 -
Vium5956g00002 388 SUPERFAMILY SET domain 130 349 IPR046341 -
Vium5956g00002 388 MobiDBLite consensus disorder prediction 373 388 - -
Vium5956g00002 388 Pfam CXC domain 172 203 IPR041355 -
Vium5956g00002 388 ProSiteProfiles CXC domain profile. 117 219 IPR026489 -
Vium5956g00002 388 ProSiteProfiles SET domain profile. 233 348 IPR001214 GO:0005515
Vium5956g00002 388 FunFam Putative histone-lysine N-methyltransferase EZH2 134 350 - -
Vium5956g00002 388 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 21 375 IPR045318 GO:0006338|GO:0042054
Vium5956g00002 388 SMART set_7 233 354 IPR001214 GO:0005515
Vium5956g00002 388 MobiDBLite consensus disorder prediction 359 388 - -
Vium5956g00002 388 MobiDBLite consensus disorder prediction 76 112 - -
Vium5956g00002 388 Pfam SET domain 244 347 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5956g00002 Vium-Chr5956 1308 7611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5956g00002 222 369 C2H2 Transcription Factor Family AT2G23740 29.091 9.17e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium5956g00002 SET 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5956g00002 - - vum:124842068 830.861