Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5953g00002 ATGTTCAAATCCTACGGGAAAGTTGATGAGCATGAGCAAATGGTGTTGGAAGCAAGGAAGAAAACCAGAAAGAGAATCACAATCATAGGATTGTCCTCGATTGTTTTAGCAGCCGTTGTTTTTGCTCTTGTGTTTGGCATTCGTGGCACCAACTCTTCAGAAGGTGACAATGATGCTCACACTGTGACAGATTCAGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGATTCGTGCTACAGCAGCCTTGGTTCTGCTGTGAACTCAAACCAGGTTCAGCCTCAGGAGTTGTTCCTGCTGTCAAAGAAGGTTGCCTTATCTGAAGTGTCCAAAGCTGTTGAATATTTCAGTGATCATGATCATGGAGCTTTCAAAGGGGTGGTTGTGAAGAACAGCAGGACCAAGGAGGCTATGAAAAATTGCAGGGAGCTTTTGGGTCTTGCGGTTGATCATCTGAATAGCTCTTTGACATCAGGGGAAAACTTTTCGTTTGAAGTTTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGTACATATCTGCATACTTGTATCGAAGGCTTTGAAGATGAAAAAGAAGCAATTAAGACAAGTGTAGTAAGCTATCTTAAAAATTCTACACAGTTTACCAGTAACAGTCTTGCCATCGTTACCTGGATCAACAAGGCTACAACCAATCTGAACCTTAGGCGCTTACTGAGTTTACCTCATCACAATGAAGCACCAGCATGGCTTCCTTCAAAAGATAGGAGACTCCTTCTGACAGAGGATTTGAGGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAGAAAATTTCTGATGCACTTAAACATGTTCCTGATAAGAGCAACAAGAGGACTGTAATCTATGTGAAAAAAGGGATTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGAATGACTTCTAGTATTGTATCTGCCAACCTTAATTTTGCGGATGGCACACCAACTTTTTCAACAGCAACATTTGCTGTATTTGGAAGGAATTTCATTGCTAGAGATATGGGTTTTAGGAACAGTGCTGGTCCACAGAAGCATCAAGCAGTAGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGCCACATTGATGCATATCAGGATAGTCTCTATGCTCATTCCAACCGTCAATTATACAGAGAATGTAACATCTATGGCACGGTTGATTTCATCTTTGGCAATTCTGCAGTTGTGATCCAAAACTGTAATATTAGGCCAAAGTTACCAATGCATGGCCAGCAAAACACAATCACAGCTCAGGGAAAAACTGACCCTAACATGAACACTGGGATTTCCATTCAGAACTGCAACATTTCACCCTTTGGTAACTTGAGTTCTGTGGAGACATATCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAAATCCAGAATGGAAGATTTTGTGAACCCCAAAGGCTGGTTACCATGGACAGGGAACTCAGCTCCAGACACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATTACAAGTGAACAAGCCAGCAAGTTTACTATCAAAGGTTTTCTACAGGGAGATAAATGGATTTCTGCAGCAGGTGCCCCATTTAAGTCTGATCTATGA 1710 0.4158 MFKSYGKVDEHEQMVLEARKKTRKRITIIGLSSIVLAAVVFALVFGIRGTNSSEGDNDAHTVTDSVKAVCDVTLYKDSCYSSLGSAVNSNQVQPQELFLLSKKVALSEVSKAVEYFSDHDHGAFKGVVVKNSRTKEAMKNCRELLGLAVDHLNSSLTSGENFSFEVFEDLQTWLSAAGTYLHTCIEGFEDEKEAIKTSVVSYLKNSTQFTSNSLAIVTWINKATTNLNLRRLLSLPHHNEAPAWLPSKDRRLLLTEDLRKKADIVVAKDGSGKYKKISDALKHVPDKSNKRTVIYVKKGIYYENVRVEKTKWNVMMIGDGMTSSIVSANLNFADGTPTFSTATFAVFGRNFIARDMGFRNSAGPQKHQAVALMTSADQAVYYRCHIDAYQDSLYAHSNRQLYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVETYLGRPWKNYSTTVYMKSRMEDFVNPKGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSEQASKFTIKGFLQGDKWISAAGAPFKSDL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5953g00002 569 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Vium5953g00002 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 220 IPR035513 -
Vium5953g00002 569 NCBIfam pectinesterase inhibitor domain 35 220 IPR006501 GO:0004857
Vium5953g00002 569 CDD PMEI-like_3 68 222 - -
Vium5953g00002 569 FunFam Pectinesterase 62 221 - -
Vium5953g00002 569 Gene3D - 258 569 IPR012334 -
Vium5953g00002 569 FunFam Pectinesterase 257 569 - -
Vium5953g00002 569 Pfam Pectinesterase 263 555 IPR000070 GO:0030599|GO:0042545
Vium5953g00002 569 Pfam Plant invertase/pectin methylesterase inhibitor 65 216 IPR006501 GO:0004857
Vium5953g00002 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 221 IPR035513 -
Vium5953g00002 569 PANTHER PECTINESTERASE 34 559 - -
Vium5953g00002 569 SMART PMEI_2 61 216 IPR006501 GO:0004857
Vium5953g00002 569 SUPERFAMILY Pectin lyase-like 261 566 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5953g00002 Vium-Chr5953 19347 21687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5953g00002 1 569 Carbohydrate Esterase AT3G10710 55.903 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5953g00002 - - gmx:100811152 978.008