Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5953g00001 ATGTCATCCCCACCATTTTTCTTTCTCTTTCTCTTCTTCCTCTCAGCTCCAGTATTACTCTTAGCTCAATCTCCACCTTCTCCACCTTCTCCACCTTCTCCTTCCTCTTCTCTTGCCTGCAAAGCCACACTCTATCCAAAACTATGCCGTTCCATTCTCTCAGCCATCCGTGCCTCCCCTTCCGACCCTTATGGCTACGGCAAGTTCTCCATAAAGCAAAGCCTCAAACAGGCACGTAAACTCGCCAAGGTCTTTGATGACTTCCTCCATCGCCACCAATCGTCTTCTTCCCTCAACCATGCAGAAGTTGCATCCCTTGGAGATTGCAAAGACCTCAACCTGCTAAACGTGGACTACTTATCGTCCATATCTGAAGAGCTCAAATCCGTGAGTTCTTCAGATACTGAACTGGTTGAGAAAATGGAGAGCTATCTCAGTGCTGTTGCCACCAACCACTACACGTGCTATGATGGGTTGGTGGTGACCAAAAGCAACATTGCCAGCGCCCTTGCTGTGCCACTGAAGGATGTGACCCAGTTGTACAGTGTCTCTCTTGGGTTGGTCACCGAGGCTCTCGACAAGAACCTCAGAAGAAACAAGACACGCAAACATGGACTACCCACCAAAACCTTCAAGGTCAGGCAACCACTGGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCACCAAGTTATCCAATTGCAGCAGAGCTGGAAGGAATCTTAAGGAAAGTGGAAGCCAAGGAATTTTATTACAGGATTTTGTGATTGTGAGTTCTTATGGAATGGACAACTATACTTCCATTGGAGAGGCTATTGCTGCTGCACCCAATAACACAAAGCCTGAAGATGGATATTTCCTGGTGTATGTTAGGGAGGGAATCTATGAGGAATATGTGGTAATTCCCAGAGAAAAGAAGAATATATTGCTTGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTTTCAGGAGAAAGGTTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCAGAAAAACACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCTACATTCTACCGCTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTTCACTCTCTGAGGCAATTCTACAGGGAATGTGAAATCTATGGCACTGTGGACTTCATTTTTGGCAACGCAGCCGTGGTGTTCCAACAGAGTAAGATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTTTTCAGACCACTGGCATTTCAATCCAAAACTGCACCATTGATGCCGCACCAGACTTAGCTGCGGACTTGAATTCCACAGCAAGCTACTTAGGCCGGCCATGGAAGTTGTATTCAAGGACTGTTTTCCTGCAATCATACATTGGAAATGTTATTCAACCTGCAGGGTGGTTAGAGTGGAATGGCACAGTTGGTTTAGACACCCTCTTTTATGGTGAGTTTAACAACTATGGTCCTGGTTCTAACACTAGCGATAGAGTACAGTGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTGAACTTCACGTTGGGAAATACTTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTGTTAAGATAA 1716 0.4516 MSSPPFFFLFLFFLSAPVLLLAQSPPSPPSPPSPSSSLACKATLYPKLCRSILSAIRASPSDPYGYGKFSIKQSLKQARKLAKVFDDFLHRHQSSSSLNHAEVASLGDCKDLNLLNVDYLSSISEELKSVSSSDTELVEKMESYLSAVATNHYTCYDGLVVTKSNIASALAVPLKDVTQLYSVSLGLVTEALDKNLRRNKTRKHGLPTKTFKVRQPLEKLIKLLRTKYSCTKLSNCSRAGRNLKESGSQGILLQDFVIVSSYGMDNYTSIGEAIAAAPNNTKPEDGYFLVYVREGIYEEYVVIPREKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQQSKIYARKPLPNQKNAVTAQGRTDPFQTTGISIQNCTIDAAPDLAADLNSTASYLGRPWKLYSRTVFLQSYIGNVIQPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSDRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5953g00001 571 NCBIfam pectinesterase inhibitor domain 9 189 IPR006501 GO:0004857
Vium5953g00001 571 Pfam Pectinesterase 257 554 IPR000070 GO:0030599|GO:0042545
Vium5953g00001 571 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Vium5953g00001 571 PANTHER PECTINESTERASE 19 559 - -
Vium5953g00001 571 CDD PMEI-like_3 38 190 - -
Vium5953g00001 571 FunFam Pectinesterase 252 569 - -
Vium5953g00001 571 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857
Vium5953g00001 571 SMART PMEI_2 31 187 IPR006501 GO:0004857
Vium5953g00001 571 Gene3D - 255 571 IPR012334 -
Vium5953g00001 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Vium5953g00001 571 SUPERFAMILY Pectin lyase-like 255 568 IPR011050 -
Vium5953g00001 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5953g00001 Vium-Chr5953 7727 19081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5953g00001 6 570 Carbohydrate Esterase AT3G10720 57.002 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5953g00001 K01051 - gmx:100816503 1003.05