Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5952g00003 ATGGGTGGCGAGGAACAGGGAGTTTCTGTTTGTGCTGCCTGCACCCACAACTGTCTATTGTTCCACCAAACCAAACAAACCTCACCAACCTCTTTCTTCAAGTTCCTCACTAGACAAGATTATTTAACAACTTTGTGTATTCCTCCTGCTTTTAGTGGTATTGTGGCCAGCATGGTTAATAAGAAAATCAATCTCAATGATTCAACTGGGCAGCAGTGGAAGGTTAAAGTATCAGAAGTTAATGGTTCATTTGTTTTTGGGGAGGGATGGAGTCGTTTTTCATCAGGTCATGGGCTTAAAGTTGGCTATCTTTTGGTACTCAATTACATTAAGGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTTGGTCTTCCTGAAAAAAGAAATCAGAAGAAAAGAAGTAGGGGCAAAATTGGCTCACCAGTTAGAGATGGTATCTTGGTCAGACAAGAACTCGATGCGCCAAGGCAGTGCAGCGAGGTTGACTTAGTAGTACCACAAAAGGCTAAAGAGAGTGGCCAACATGTGCTCGTACTAGATCACAGTGAAGAAGACCCATGTCATTCAAAAAGCCTAGAATTTGACCAGAGCCATGAGGATGATGGGACCATGAAAAGTCAGAACGGAGATTTAATAGTTTCTAATGTTGATTATGAATCCAATATCGTTGAAAAGGATGCAATGATATGCAGTAAGGATACTATGCTTGAAGGGGTGTTGAGTACTGAAGTTGCCTTGGATATATCTGAACTTCGAATATATGGAAGAAGTGCTTCTCTAGAGGCAGACACATATACATATGACAAGACTTTTAATTCGAAAATTGAAGAGAACAAAGCCATCTTGTCCAACAGGGAAGCTCAAGAGTGCCAATTTTCCAAGGCCTTAGGTGAAATGAAGAAATTGCCTGTGGACATGACTCCCAACTTGGACAGCTCCATGGATGAATTTCATTTAACAGGTGAAGTGTCTAAAAAGTTGAAGAAAGAGTTTGTAACTCTCAATGAAATGGAAGCAACAGGATTGCCCAAGGAAATCAACGGACTGTTGAACTCTGACATATTTAATGAAGATAATGCGAGTCACTTTAAACCTACACAGCTCTCCTGTGTGGTTCCTCATGATAACGTTTTCCTTGAATTGCCCTCATGCCTGCCTTTGATTCGCAAGGTAAAGGTAGATCAGCAAAGGAAGATGTTAGTATTTCTTCGGGATCCACTGAGGAGATTGTGGCCGGTGTATTATCATGAAAAACCACATTTGAAATTACTGGCACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAGCCAAAAGATGAGTGTATTTTTGAGGCTGAGGTTGATCCTGAGTGCAAGTCTAAACGTATCTTATCTGTTCAGATAGTCCACAACAAGTGA 1422 0.4065 MGGEEQGVSVCAACTHNCLLFHQTKQTSPTSFFKFLTRQDYLTTLCIPPAFSGIVASMVNKKINLNDSTGQQWKVKVSEVNGSFVFGEGWSRFSSGHGLKVGYLLVLNYIKDLHFDVKIYDTSACEKLGLPEKRNQKKRSRGKIGSPVRDGILVRQELDAPRQCSEVDLVVPQKAKESGQHVLVLDHSEEDPCHSKSLEFDQSHEDDGTMKSQNGDLIVSNVDYESNIVEKDAMICSKDTMLEGVLSTEVALDISELRIYGRSASLEADTYTYDKTFNSKIEENKAILSNREAQECQFSKALGEMKKLPVDMTPNLDSSMDEFHLTGEVSKKLKKEFVTLNEMEATGLPKEINGLLNSDIFNEDNASHFKPTQLSCVVPHDNVFLELPSCLPLIRKVKVDQQRKMLVFLRDPLRRLWPVYYHEKPHLKLLAHGWLDFSRANNIQPKDECIFEAEVDPECKSKRILSVQIVHNK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5952g00003 473 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Vium5952g00003 473 Gene3D - 366 473 IPR015300 -
Vium5952g00003 473 Gene3D - 23 125 IPR015300 -
Vium5952g00003 473 CDD B3_DNA 369 452 IPR003340 GO:0003677
Vium5952g00003 473 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Vium5952g00003 473 MobiDBLite consensus disorder prediction 193 211 - -
Vium5952g00003 473 SUPERFAMILY DNA-binding pseudobarrel domain 26 125 IPR015300 -
Vium5952g00003 473 PANTHER B3 DOMAIN-CONTAINING 25 453 - -
Vium5952g00003 473 SUPERFAMILY DNA-binding pseudobarrel domain 403 453 IPR015300 -
Vium5952g00003 473 MobiDBLite consensus disorder prediction 193 214 - -
Vium5952g00003 473 SMART B3_2 32 123 IPR003340 GO:0003677
Vium5952g00003 473 CDD B3_DNA 31 121 IPR003340 GO:0003677
Vium5952g00003 473 ProSiteProfiles B3 DNA-binding domain profile. 407 473 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5952g00003 Vium-Chr5952 14023 17403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5952g00003 22 126 B3 DNA Binding Superfamily AT4G01580 31.250 3.76e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium5952g00003 B3 1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5952g00003 - - vra:106761496 879.782