Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5940g00001 ATGGTTGAATCAGCCATGTCAAAGACAGTGATGGAGGAAGTAATGGCAACATGGTCAGAGGGGTCAGAGGAAGATGAGCTTGTGAGAGAGCTTTTGGATGATGGGTCTCCCCTTCTTATGGTGCCTCAGGAGCCAATTCAAAACCCCATAACAAAACCCTCTTCAACTCACCATGCCTTTAATAGCTTCCTCTCCAACATTTACTCAGGTCCTACTATCTCAGATATTGAAAATGCTTTGTCAGTCACCAACCAAAGAGACCACTTCCCACCACTCTCATCACCCAGAGTTTCCATATTGGAGAGGGGTTTGAGCAAGATTGAGAATAAGTATACCCTCAAAATCAAATGCTTTGGCAATGGGATGGGAGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCATTGAAGACCCAGACACTCTTATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTATCCATATTTTCTCATGGGCCAACCCGACCAATCTCAATCCCATCAACCCATCAAGAAGTCCAAGCCCACTTCTTCACAGGACCAAGCCCAAGCCCATATAGAAGATTATGTTCATGAGGCCCAATCAAGTGCCACTTCGGGTGTGCTGCCATCCACTTCATTGGACTCTCCACAAGACATGGCCCAGGAAAACTTGGGCTCACAAGGCTTGCTTGAAGACATGGTGCCATTCATGGTTCGGAACCCAGCAAACAGTGTGAGCAGTGCTCACACAAATTTTTCTTGTTCTTCGTTTCGTTCTCCTCCGACCTCACCTCTGTGGCTTAAATTCTAG 882 0.4603 MVESAMSKTVMEEVMATWSEGSEEDELVRELLDDGSPLLMVPQEPIQNPITKPSSTHHAFNSFLSNIYSGPTISDIENALSVTNQRDHFPPLSSPRVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQPDQSQSHQPIKKSKPTSSQDQAQAHIEDYVHEAQSSATSGVLPSTSLDSPQDMAQENLGSQGLLEDMVPFMVRNPANSVSSAHTNFSCSSFRSPPTSPLWLKF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5940g00001 293 MobiDBLite consensus disorder prediction 192 212 - -
Vium5940g00001 293 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 209 IPR044810 GO:0003700
Vium5940g00001 293 SMART WRKY_cls 123 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5940g00001 293 ProSiteProfiles WRKY domain profile. 118 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5940g00001 293 Pfam WRKY DNA -binding domain 124 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5940g00001 293 FunFam WRKY transcription factor 110 184 - -
Vium5940g00001 293 Gene3D WRKY domain 119 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5940g00001 293 SUPERFAMILY WRKY DNA-binding domain 121 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5940g00001 Vium-Chr5940 6684 9185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5940g00001 11 264 WRKY Transcription Factor Family AT5G43290 42.391 3.78e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium5940g00001 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5940g00001 - - gmx:100803946 472.241