Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium593g00022 | ATGCCAACATCGTGGGCTGATTTGGCTGCGAATTCCGCCTCTGAAAATGCGGGAACATCCAACTCCACAGCTCCGACGCGGCCTGTTTATGTGCCTCCGCATCTGAGAAACCGTGCAGCATCAGCATCAGCATCAACGGAATCCCCCCCTGCTCCGCCCAATGTGAGTTCTAATAATGTCGGATCACGGTGGGGTGCGCCCAGAAACGGTTGGGGGAACAGAACCGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGAAGATCAGGAGGATGCAGCTGAAGAGGGAGCAGCAGCTTCTGGCGAGGAGCAGGGAAACATGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGTGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGATTTGGGCGATGCTCTTAATCATAACATTAGACGCTGCAAATATGTTAAACCAACGCCGGTCCAGCGGCATGCCATACCCATATCCCTTGGCGGTCGGGATTTGATGGCTTGTGCTCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGGCCCCCCTTCGGCCCCCTCGCGGTGTCCGTACAGTCTATCCATTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGATGAGGCAGATAGGATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAGAGAGATACAGAGACTGGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCCGTTGGAAGAGTGGGCTCAAGTACCGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGCAAATGGGGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCATTGGTTGTGTCGTAATGGTTTTCCAGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGCGGGCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCACTAGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCTATTGGTGGTGGACGGAACCGTCGAACAGGAGGAAGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTACAGGAAACAACAATGGTGGATATGGCAATTCTGGTGGTTATGGTGGAGGATATGGTCCTGGGGTAACTAGTGCTTGGGACTGA | 1779 | 0.4896 | MPTSWADLAANSASENAGTSNSTAPTRPVYVPPHLRNRAASASASTESPPAPPNVSSNNVGSRWGAPRNGWGNRTGGWDRREVNPFEDQEDAAEEGAAASGEEQGNMGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNHNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQAPLRPPRGVRTVYPFALVLSPTRELSVQILEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPREIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPDWLSRYAARSSIGGGRNRRTGGSRFGGRDFRREGSFSRGGSDYYSTGNNNGGYGNSGGYGGGYGPGVTSAWD | 592 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium593g00022 | 592 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vium593g00022 | 592 | MobiDBLite | consensus disorder prediction | 39 | 64 | - | - | |
Vium593g00022 | 592 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 214 | 503 | IPR027417 | - | |
Vium593g00022 | 592 | Gene3D | - | 86 | 351 | IPR027417 | - | |
Vium593g00022 | 592 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 360 | 527 | IPR001650 | - | |
Vium593g00022 | 592 | SMART | helicmild6 | 407 | 488 | IPR001650 | - | |
Vium593g00022 | 592 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 96 | 527 | - | - | |
Vium593g00022 | 592 | FunFam | ATP-dependent RNA helicase RhlB | 352 | 531 | - | - | |
Vium593g00022 | 592 | Pfam | DEAD/DEAH box helicase | 155 | 338 | IPR011545 | GO:0003676|GO:0005524 | |
Vium593g00022 | 592 | MobiDBLite | consensus disorder prediction | 542 | 556 | - | - | |
Vium593g00022 | 592 | FunFam | Probable ATP-dependent RNA helicase DDX4 | 94 | 351 | - | - | |
Vium593g00022 | 592 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 162 | 349 | IPR014001 | - | |
Vium593g00022 | 592 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 131 | 159 | IPR014014 | GO:0003724 | |
Vium593g00022 | 592 | MobiDBLite | consensus disorder prediction | 532 | 564 | - | - | |
Vium593g00022 | 592 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
Vium593g00022 | 592 | SMART | ultradead3 | 150 | 364 | IPR014001 | - | |
Vium593g00022 | 592 | CDD | SF2_C_DEAD | 361 | 497 | - | - | |
Vium593g00022 | 592 | Gene3D | - | 352 | 531 | IPR027417 | - | |
Vium593g00022 | 592 | Pfam | Helicase conserved C-terminal domain | 373 | 488 | IPR001650 | - | |
Vium593g00022 | 592 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
Vium593g00022 | 592 | CDD | DEADc_DDX3_DDX4 | 132 | 355 | IPR044763 | GO:0003724|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium593g00022 | Vium-Chr593 | 66908 | 73830 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium593g00022 | 129 | 520 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.807 | 2.23e-61 | 207 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium593g00022 | K11594 | - | gmx:100781668 | 947.192 |