Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium593g00021 ATGCCAACATCGTGGGCTGATTTGGCTGCGAATTCCGCCTCTGAAAATGCGGGAACATCCAACTCCACAGCTCCGACGCGGCCTGTTTATGTGCCTCCGCATCTGAGAAACCGTGCAGCATCAGCATCAGCATCAACGGAATCCCCCCCTGCTCCGCCCAATGTGAGTTCTAATAATGTCGGATCACGGTGGGGTGCGCCCAGAAACGGTTGGGGGAACAGAACCGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGAAGATCAGGAGGATGCAGCTGAAGAGGGAGCAGCAGCTTCTGGCGAGGAGCAGGGAAACATGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGTGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGATTTGGGCGATGCTCTTAATCATAACATTAGACGCTGCAAATATGTTAAACCAACGCCGGTCCAGCGGCATGCCATACCCATATCCCTTGGCGGTCGGGATTTGATGGCTTGTGCTCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGGCCCCCCTTCGGCCCCCTCGCGGTGTCCGTACAGTCTATCCATTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGATGAGGCAGATAGGATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAGAGAGATACAGAGACTGGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCCGTTGGAAGAGTGGGCTCAAGTACCGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGCAAATGGGGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCATTGGTTGTGTCGTAATGGTTTTCCAGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGCGGGCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCACTAGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCTATTGGTGGTGGACGGAACCGTCGAACAGGAGGAAGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTACAGGAAACAACAATGGTGGATATGGCAATTCTGGTGGTTATGGTGGAGGATATGGTCCTGGGGTAACTAGTGCTTGGGACTGA 1779 0.4896 MPTSWADLAANSASENAGTSNSTAPTRPVYVPPHLRNRAASASASTESPPAPPNVSSNNVGSRWGAPRNGWGNRTGGWDRREVNPFEDQEDAAEEGAAASGEEQGNMGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNHNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQAPLRPPRGVRTVYPFALVLSPTRELSVQILEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPREIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPDWLSRYAARSSIGGGRNRRTGGSRFGGRDFRREGSFSRGGSDYYSTGNNNGGYGNSGGYGGGYGPGVTSAWD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium593g00021 592 MobiDBLite consensus disorder prediction 1 27 - -
Vium593g00021 592 MobiDBLite consensus disorder prediction 39 64 - -
Vium593g00021 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 503 IPR027417 -
Vium593g00021 592 Gene3D - 86 351 IPR027417 -
Vium593g00021 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 527 IPR001650 -
Vium593g00021 592 SMART helicmild6 407 488 IPR001650 -
Vium593g00021 592 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 527 - -
Vium593g00021 592 FunFam ATP-dependent RNA helicase RhlB 352 531 - -
Vium593g00021 592 Pfam DEAD/DEAH box helicase 155 338 IPR011545 GO:0003676|GO:0005524
Vium593g00021 592 MobiDBLite consensus disorder prediction 542 556 - -
Vium593g00021 592 FunFam Probable ATP-dependent RNA helicase DDX4 94 351 - -
Vium593g00021 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 349 IPR014001 -
Vium593g00021 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Vium593g00021 592 MobiDBLite consensus disorder prediction 532 564 - -
Vium593g00021 592 MobiDBLite consensus disorder prediction 87 106 - -
Vium593g00021 592 SMART ultradead3 150 364 IPR014001 -
Vium593g00021 592 CDD SF2_C_DEAD 361 497 - -
Vium593g00021 592 Gene3D - 352 531 IPR027417 -
Vium593g00021 592 Pfam Helicase conserved C-terminal domain 373 488 IPR001650 -
Vium593g00021 592 MobiDBLite consensus disorder prediction 1 82 - -
Vium593g00021 592 CDD DEADc_DDX3_DDX4 132 355 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium593g00021 Vium-Chr593 66908 73830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium593g00021 129 520 Eukaryotic Initiation Factors Gene Family AT3G19760 31.807 2.23e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium593g00021 K11594 - gmx:100781668 947.192