Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium593g00003 ATGGCGTTAAATGCAAGTGAAACGATGTTCCTCTCAGTCACGGAAGTGGATGAAAGGAGACAAAGGTACCAGGTATGTCTTGATGCTCCACCCCACATTGTTTCAGATGGGTTATGGCGTAGCAGCCCACAAAATACAAGAGCTCCGATGAGATCTTTTCTCCCCTTGTTTGAGTTGCAAGTCCTTCTGATATTTGCCATCACCCAAATCTGTCGGCTCATCCTCATGCCCTTCAAAGTTCCTCTCTTTATTTCCCAGATGATGGCTGGGCTAATTCTGCAAGCTCTTTTTGTGGGGGAACCAGTGGGGTCGTACATGAGGGTGCTGTTTCCGTATGGAACTCACGACACGATCACGACAATAACGTCGATTGGTTTTGTGCTTTTCATTTTCATAAACGGTGTGCAGATGGATTTTAGCTTGATAACAAGGATGGGAAAGAAGGCATGGACCATTGCCATTATCGGATTGGTAGTGCCCATACTCACCGCAGTTGCATTCTTGGCCGTACTAACACATCCACTGCTTGAAGTCATCGATAATAACTACAGCAGTTTCCTTGTTGCATTGGTCTCCCACACTGTCATTTCATTTGCCGTCATTGCTTCCCTTCTCAATGAACTTCAAATCCAAAACTCCGAACTTGGCAAATTGGCATTGTCTGCCGCATTGGTGAGTGACGTACTTTGCACATTCGCTACCACCATCGGCACTGTTTTTATGTTTAGTGAGGGTGATGGTACCAAAGAGATGGTTACAAACCTCTTGGGTTTGTTTGCAATGGCTATCTTTGTTCCATTGGTGTGTCGACCAGTAATGTTTTGGATCGTCAGACGTACACCAGAAGGAAGACCTGTCAAAGATGGTTACCTCTACGTCATCATCGTACTGCTCTTTGTCTTAGGTTGGGTTTCGGTTAAAATAAACCAAGAATTCGTGCTCGGAGCTTTCATTCTGGGATTGGCCGTGCCGGAGGGACCTCCACTGGGAGCTGCATTGGTCAAGAAGCTTAACTTCTTCGGTACCACCTTCCTTCTGCCAATATTCGTCACCATCTGCATGCTGAAAGCAGATTTTTCCTCCACTTATTCCTCCACATCGGTTTTCGCTGTCTGTCTCGTCATCATCCTCACCCACTTGGTCAAAATTTTATCCTGCATTCTACCCGCCCTCTACTGCCACATGCCCTTCCGTGATGCTCTCTCCCTCTCCCTCATTTTAAACTCCAAAGGCGTTGTCGAAATCGGACTCTATTGCTTCTTATACGACTACAAGGTAATCGATGGGCTGACATACGGAATAATGATTCTGAGCATAATTGTGGTAGCATGCATAGTGCAATGGTCCGTGAGGTTTTTGTACGACCCTTCAAGAAAATACGCCGGGTACCAAAAACGGAACATCATGAGCTTAAGAGCTTGGTCGGAGCTGAGGATACTGGTGTGCATTCATAAGCCAAGCCACATATCGTCGATGATAGATATGATTGACCTGTGTTGTCCAACGGCAGAAAGTCCGATCATAGTGGATGCATTGCATCTGATAGAGTTGGTGGGACGTGCCTTGCCAATTTTCATCCCGCATCGCATTCAAAGGCAAGAATCAGGGCTTCAACACAGGTCATACTCAGACGACGTAATTCTTGCCTTCGACGTTTACGAGCACGAGAACCCTCATGTGGTGACGGCGTACCCCTGCACCGCAGTGTCTCCACCGGGCCTGATGTACGAAGACGTTTGCAACCTTGCCTTTGACAAGGTGGCGTCCATCATAATTCTTCCGTTTCATCTGAGATGGTCGACGGACGGGGAAGTGGAATCGGACGAGAAGAGCATAAGGGCACTGAATTGTAGGGTGCTAGAAAAAGCTCCATGCTCGGTCGGAATCCTGGTGTCGCGAGGTTCGCAGAGAATGAGAGAGGAGTCTTCAATTCGAGTGGGGTTGATTTATTTGGGGGGAGAGGACGACGAGGAGGCGCTGTGCATAGCGAAGAGAGCTATGATGAAGACGGGGATGAAGCTGGTGGTGTACCACCTGGTGTACGAGGCAGAGGAGGAGTGGGATGAAGGGGAAGCCATGGAAGAGATGAAACACAACATAAGATACCAACAGATAGTGGCAAGGGAAGGGTCTGAGACAGCAGCGTTCCTCGGTGAGGTGGCGAAAGAGCATGATTTCTTCATTGTCGGAAGGAGGCATGGGATTGAGTCCCCTCAGACCCAGGGACTCACAAACTGGAGCGAATTCCCAGAGTTAGGTGTCATCGGCGACTTTCTGGCCTCGCCGGATTTGGAGAGCCGCGCATCAATTTTGGTGGTGCAGCAACAAGTCGCACTCAAGCCTCGCAAAGGCTGGTTATTTTAG 2364 0.4843 MALNASETMFLSVTEVDERRQRYQVCLDAPPHIVSDGLWRSSPQNTRAPMRSFLPLFELQVLLIFAITQICRLILMPFKVPLFISQMMAGLILQALFVGEPVGSYMRVLFPYGTHDTITTITSIGFVLFIFINGVQMDFSLITRMGKKAWTIAIIGLVVPILTAVAFLAVLTHPLLEVIDNNYSSFLVALVSHTVISFAVIASLLNELQIQNSELGKLALSAALVSDVLCTFATTIGTVFMFSEGDGTKEMVTNLLGLFAMAIFVPLVCRPVMFWIVRRTPEGRPVKDGYLYVIIVLLFVLGWVSVKINQEFVLGAFILGLAVPEGPPLGAALVKKLNFFGTTFLLPIFVTICMLKADFSSTYSSTSVFAVCLVIILTHLVKILSCILPALYCHMPFRDALSLSLILNSKGVVEIGLYCFLYDYKVIDGLTYGIMILSIIVVACIVQWSVRFLYDPSRKYAGYQKRNIMSLRAWSELRILVCIHKPSHISSMIDMIDLCCPTAESPIIVDALHLIELVGRALPIFIPHRIQRQESGLQHRSYSDDVILAFDVYEHENPHVVTAYPCTAVSPPGLMYEDVCNLAFDKVASIIILPFHLRWSTDGEVESDEKSIRALNCRVLEKAPCSVGILVSRGSQRMREESSIRVGLIYLGGEDDEEALCIAKRAMMKTGMKLVVYHLVYEAEEEWDEGEAMEEMKHNIRYQQIVAREGSETAAFLGEVAKEHDFFIVGRRHGIESPQTQGLTNWSEFPELGVIGDFLASPDLESRASILVVQQQVALKPRKGWLF 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium593g00003 787 Pfam Sodium/hydrogen exchanger family 62 446 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium593g00003 787 Gene3D - 57 461 IPR038770 -
Vium593g00003 787 PANTHER CATION/H + ANTIPORTER 33 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium593g00003 Vium-Chr593 10084 12637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium593g00003 22 776 Antiporter Super Family AT2G28180 34.668 3.79e-145 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium593g00003 K26731 - gmx:100785062 1157.9