Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5933g00001 ATGGGAATGGTTGGTAATAATTGGTTCCCTTCGGTGCTCAAAGTTCCTTTGGGTAGGCAACTACAGAACAAAACATTATGGCGATGTATATTTCCTCCTTATCTTAACTACCCTACAAGGCTCACTCCAATATCTTGTAAACTCCCAGAAAGTGGGACTGAGGACAACCCCACCGTCACAGGCAAGAGGCTTCACAAGAACAAGGACAGGATGGAGGACTACAACGTCGCTATGAAGAGAATGATGAGGAACCCTTATGAGTATCACCATGATCTCGGTATGAATTATACTTTTATAACGGACTACTTGATTGTGGGCTCTCAACCACAGAAACCGGAAGACATAGATCACCTAAAAAAAGAAGAGGGTGTGACATACATTCTAAATTTGCAACAGGACAAGGATGTTGATTACTGGGGAATAGATTTACAGTCAATAATAAGAAGGTGTCACGAACTTGAAATTGGCCACATTAGGAGACCGGCAAAAGACTTTGATCCAGGGTCCTTGCGAAGTGAACTACCTAAAGCTGTTGCATCCTTAGAATGGGCAATTTCTCAGGGGAAAGGAAGAGTTTATGTACACTGTACTGCAGGGCTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTCGCATGAATCTAAATGAAGCTTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAACAGCAATACGTGGAGCTACTTATGATTTGTCTAAGAATGATCCATTCAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGAAACTTGATCCAAGATCGTGTTCGCTCCCTTCGTAATACTTGA 858 0.4196 MGMVGNNWFPSVLKVPLGRQLQNKTLWRCIFPPYLNYPTRLTPISCKLPESGTEDNPTVTGKRLHKNKDRMEDYNVAMKRMMRNPYEYHHDLGMNYTFITDYLIVGSQPQKPEDIDHLKKEEGVTYILNLQQDKDVDYWGIDLQSIIRRCHELEIGHIRRPAKDFDPGSLRSELPKAVASLEWAISQGKGRVYVHCTAGLGRAPAVAIAYLFWFCRMNLNEAYDMLTSKRPCGPNKTAIRGATYDLSKNDPFKEPFENLPEYAFEDIADWERNLIQDRVRSLRNT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5933g00001 285 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 78 285 - -
Vium5933g00001 285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 237 IPR029021 -
Vium5933g00001 285 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 231 IPR000387 GO:0016311|GO:0016791
Vium5933g00001 285 CDD DSP_laforin-like 94 241 IPR045204 GO:0019203
Vium5933g00001 285 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 46 251 - -
Vium5933g00001 285 Pfam Dual specificity phosphatase, catalytic domain 116 235 IPR000340 GO:0008138|GO:0016311
Vium5933g00001 285 SMART dsp_5 95 237 IPR020422 GO:0006470|GO:0008138
Vium5933g00001 285 Gene3D Protein tyrosine phosphatase superfamily 78 285 IPR029021 -
Vium5933g00001 285 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 252 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5933g00001 Vium-Chr5933 131 3154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5933g00001 35 285 Protein tyrosine phosphatase (PTP) family AT3G10940 73.705 1.34e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5933g00001 - - gmx:100787079 466.848