Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5923g00028 ATGGCTTCCCTTTTGAGTGTGCTCTGTGTTGTGTTGGCTGTGATGAATAGCGCAGCCAAAATAGCTGCTAGGGAATTCAAAGTGGGTGGTGATTCCGGTTGGCATGAACCTGCCCCCAACGACACTGCATTTTATAATCAATGGGCTTCAACCAACAGGTTTCAAGTTGGTGATTCTTTGGTTTTTGAGTACCAGAATGACTCGGTTGTGAATGTGGAGAGATGGGAATACTTCCACTGTGACTCGAACAACCCCATCGGCGCATTTGATGATGGGAACAGCACAGTGATTCTTGGCAGCCCTGGGATGTTCTACTTCATCAGTGGAACTGAAGATCAATGTCAGAAAGGGGAGAAGTTGATGGTAGAAGTCATGTCACCACGCTCACTTCCATCACAGGCTTTCTCACCATTGCCTCTTTCTCATAGTCATGGCTCAAGGGTTTCTGATTCCATGCTGCTTAGCTTCAGTTTTTTCTTCTGTTTTCTTCTTCTGCTAACTGTGGTTAACTAG 513 0.4581 MASLLSVLCVVLAVMNSAAKIAAREFKVGGDSGWHEPAPNDTAFYNQWASTNRFQVGDSLVFEYQNDSVVNVERWEYFHCDSNNPIGAFDDGNSTVILGSPGMFYFISGTEDQCQKGEKLMVEVMSPRSLPSQAFSPLPLSHSHGSRVSDSMLLSFSFFFCFLLLLTVVN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5923g00028 170 Gene3D - 22 129 IPR008972 -
Vium5923g00028 170 Pfam Plastocyanin-like domain 41 117 IPR003245 GO:0009055
Vium5923g00028 170 SUPERFAMILY Cupredoxins 23 125 IPR008972 -
Vium5923g00028 170 FunFam Early nodulin-like protein 1 23 129 - -
Vium5923g00028 170 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055
Vium5923g00028 170 PANTHER BLUE COPPER PROTEIN 22 131 IPR039391 GO:0009055
Vium5923g00028 170 CDD OsENODL1_like 24 125 IPR041846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5923g00028 Vium-Chr5923 149370 149992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5923g00028 2 125 Phytocyanin Superfamily AT1G79800 50.000 1.51e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5923g00028 - - vun:114166188 268.47