Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5923g00026 ATGACACAAACAACAATCTCTTCTACGTTGTCGTCACCGTCCTCGCATTCGGGTCCAAAGGCTCATGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGCGTACGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGCGAACCGCGCAAGAAGTCTCGCATCTGGCTCGGAACCTTCGCCACCCCGGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAAGGCCAATCCGCAATCCTCAACTTCCCGGAAATCGCGGACCTGCTCCCCCGCCCCCTCACGTGCTCCCCACGCGACATTCAAGCCGCCGCCACCGCCGCCGCCTCCATGTCTAAATTCGACTCCGTAACACAAACCTCGGACTCGGAAACAGAAACTTCCGAAGAATCCGAACTGAGCGAGATAGTGGAGCTTCCGAACATCGAAGACAGCTTTGACTCGTCCGTTGACTCGTTCGTGATGGTCGACGTGGTGGACAGTTGGATGTTTCCGCCATTGGACTCGTTCTGCGCGGCCTTTTCCGATGAGTTGTTTTCGCAACAGTGTTGTTCTGAAACGCTATTACCCATTTGGGATTGA 609 0.5747 MTQTTISSTLSSPSSHSGPKAHARAKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAATAAASMSKFDSVTQTSDSETETSEESELSEIVELPNIEDSFDSSVDSFVMVDVVDSWMFPPLDSFCAAFSDELFSQQCCSETLLPIWD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5923g00026 202 MobiDBLite consensus disorder prediction 1 36 - -
Vium5923g00026 202 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Vium5923g00026 202 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Vium5923g00026 202 MobiDBLite consensus disorder prediction 123 142 - -
Vium5923g00026 202 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Vium5923g00026 202 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vium5923g00026 202 MobiDBLite consensus disorder prediction 1 18 - -
Vium5923g00026 202 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Vium5923g00026 202 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vium5923g00026 202 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vium5923g00026 202 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vium5923g00026 202 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vium5923g00026 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5923g00026 Vium-Chr5923 131970 132982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5923g00026 20 175 AP2-EREBP Transcription Factor Family AT5G11590 55.307 2.57e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5923g00026 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5923g00026 K09286 - gmx:100804056 279.256