Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5923g00016 ATGTCTACACCCTTTGAACATGATTACATAGGCTTAGCAGAGACTCCATACATGGAGAAAAGCTGTGATAAGATATCCTCTTCAGTTTCGTCCAACCTTTCGTCTGAGGATGAGAACAGTTCATTTCTGAACTTCAAGGAGACGGAGCTGAGGCTTGGTCTGCCAGGTTGTGAGTTTTCTGAGAACAAACCAGGAGCTGCAGGGATCTCTCTTTTTGGCAAGGATTTGCAGAGTAGTGGCTATTCTGCTTCCTCAACTCCTTCCAAGAGCCTCAAGAGGGGTTTCTCTGATACCATTAGTTCCTCCTCCTCCTCTTCTGGGAAATGGATTTTCTCTGCCAGTGATGCAACTGGTGATGATTTGAGAAATGGGGCTAATACCTCTGCACTCTGCAGCAAAGAGGTTGGTTTGGTTCCTCACTCTGAGAAGCCGCCTCAGGTTTCTGCAACTGCAACAATTGAACATGCTCCTGCTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGGTCTTTTCGGAAGAACAGAATGGCCTATAATTTGGCAAAAAGCAACACTGAAGCTGAGGAGAAATCAAGAGCTGGTTGTCTTTATGTTAAGGTCAGCATGGATGGCGCACCTTATCTCAGAAAGGTTGATCTGAAAACCCACTGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACAATTGGTCAATGTGGTTCACGTGGAGTTTCTGGTGGGAAAGAGGGATTGAGTGAGAGAGCTTTCAAGGATCTTATTGATGGCTCTGAATATGTTCTTACTTACGAAGATAAAGATGGAGATTGGATGCTAGTGGGTGATGTGCCTTGGGAGATGTTCACTGAGTCGTGTAAGAAACTAAGGATAATGAAAGGCTCCGAGGCAATTGGACTAGCTCCAAGGGCAATGGAAAAATCTAGGAGCCAATATTAG 960 0.449 MSTPFEHDYIGLAETPYMEKSCDKISSSVSSNLSSEDENSSFLNFKETELRLGLPGCEFSENKPGAAGISLFGKDLQSSGYSASSTPSKSLKRGFSDTISSSSSSSGKWIFSASDATGDDLRNGANTSALCSKEVGLVPHSEKPPQVSATATIEHAPAPAAKAQVVGWPPIRSFRKNRMAYNLAKSNTEAEEKSRAGCLYVKVSMDGAPYLRKVDLKTHCNYIELSSALEKMFSCFTIGQCGSRGVSGGKEGLSERAFKDLIDGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKSRSQY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5923g00016 319 ProSiteProfiles PB1 domain profile. 198 301 IPR000270 GO:0005515
Vium5923g00016 319 FunFam Auxin-responsive protein 193 311 - -
Vium5923g00016 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 306 IPR003311 GO:0005634|GO:0006355
Vium5923g00016 319 Pfam AUX/IAA family 47 310 IPR033389 -
Vium5923g00016 319 Gene3D - 192 313 - -
Vium5923g00016 319 SUPERFAMILY CAD & PB1 domains 197 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5923g00016 Vium-Chr5923 76703 78831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5923g00016 186 304 B3 DNA Binding Superfamily AT2G46530 34.167 6.00e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium5923g00016 AUX_IAA 2.5e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5923g00016 K14484 - gmx:100804782 458.373