Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5923g00011 ATGATGGCTGGCAACCCTAACTGGTGGACTACTCATCCACCATCTTTGATCCCTCCCCAGTATGTTCTTGGATCTTCTTCAATACCTTTCAATTCTTCCACACAAAACCCTGATCATGAGCCTCCTCCCTCGTTGAGCCAACTTCTTTTCACTGGTTTACCGGGAGAGGAGGAAAGAGTGGCATTCAGTCATTTTCAATCGAAAAAGTTGGATGAATGGAATGAGCACATGCTTAATCCACCCCCCATAAATCCTATGGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGCAGCTTCTATCACCAAGGACATGATCAGGAATTTCAGGTTTCTGGAGCTCCTTGGTCACACATGGTGCCTGTTTCTTCTTCTCCTATGTCTAGTGTTGTTGCTAGCTTCAGTAGTAATAATTTATTGGATTTCACTTATAACAAGGAAGATCATAGGAAGAACCAACTACCAGATCACACATCCGAGTGTAATACCACAGCAAGCGCTGGAGTTTTCAAGAAGACTAAGTGTCAACCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCATTCGGAAAGACTGACACGGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCTCTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTCAACAGGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGATAAGCCAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCTGTGTCTTGTACCCAGCATGTTGGAAACGAAAACGGAGCTGATTACTGGGCACCGGCATATGGCAGTGGATTTTAA 969 0.4458 MMAGNPNWWTTHPPSLIPPQYVLGSSSIPFNSSTQNPDHEPPPSLSQLLFTGLPGEEERVAFSHFQSKKLDEWNEHMLNPPPINPMVDVIKQEVSQSGSFYHQGHDQEFQVSGAPWSHMVPVSSSPMSSVVASFSSNNLLDFTYNKEDHRKNQLPDHTSECNTTASAGVFKKTKCQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNPQSQQVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKDKPKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYGSGF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5923g00011 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Vium5923g00011 322 MobiDBLite consensus disorder prediction 239 289 - -
Vium5923g00011 322 Gene3D - 185 243 IPR036638 GO:0046983
Vium5923g00011 322 FunFam Transcription factor bHLH123 family 185 248 - -
Vium5923g00011 322 MobiDBLite consensus disorder prediction 239 255 - -
Vium5923g00011 322 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 304 - -
Vium5923g00011 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 236 IPR036638 GO:0046983
Vium5923g00011 322 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5923g00011 Vium-Chr5923 39964 45909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5923g00011 139 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 60.000 3.21e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5923g00011 - - gmx:100802121 590.882