Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5923g00003 ATGGAGGTGGTGAAAGCAATTGCTAGGCAAGAACCTGCAGCTCATGAAAATGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGGAACTCCTATCATCAGCACAGCAGATATCTAATCTCTTGTGTGCCAGTGATGCACGGGAGGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAATTTGTTGCTGGAATAATTGGGATTTGGCTCAGCGGAGGTGTTGCTGTTCCCCTTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTGATAATTCGGATATATCTGCAATACTGAGTACTGAAGAGCATAGCGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCCAAGTTTTTTCATCTTCCATCTGTTGTCAACATTTCTTCAGAGAAAAGCAGAAATGGACACTCACAGAATGGGAAAGTTCACGAAGACAGGATTTTCTTGGATGATATCATAGGAGGATCAAGTGAAGATGATCCAGCACTGATTTTGTACACCAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAGGTCCAAACTTTGGCAAAATCATGGGAGTACACGTCTGCTGACAAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGCTATTCAATGGTTTAATGGCCCCTCTCTATTCAGGTTCCTCGGTTGAGTTTTTGCCAAAATTTAGTGTGAGTGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGACGATGCTATAACAGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATAATGCAATGGATTCTGAGCTTCAACGTGTTTCAGCATCTGCCGCAAATAACTTGCGTCTTATGATGTGTGGGTCCTCTGCGCTTCCACTACCTGTTATGCAAGAATGGGAAGTCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCAAATCCATTGAAAGGTGAGCGCAAGCCAGGAACTGTGGGCAAACCATTTCCTGGTATAGAGTTCAAGATCATTGCAGATGAAGATGGTGAGAATGACAACACTGCAATGGGTGAGCTTTGCGTTAAAAGCCCTTCATTGTTTAAAGAATATTATAAACTTCCTGAGGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACCACAGATGAAGACGGATATTACATCATTTTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAATCAGTTATCATAGAGCATCCAGCTATCTCAGAATGCTGCATTTTAGGATTACCAGACAATGACTATGGAGAGATTGTAGGTGCAATCGTTGTGCTACATGATGTTAAAGAGAAGAGAGATCAAGAATCAAAGCCTACTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACTAAACTAATCCTGTGGGAAAAACTCCCTCGCAATGCCATGGGGAAGGTAAATAAAAAGGAGCTGAAGAAGCTGGTGGTTTCAGAACAGTGA 1635 0.4196 MEVVKAIARQEPAAHENVAIRADQKSYSYKELLSSAQQISNLLCASDAREGNLGGARIGIVAKPSAEFVAGIIGIWLSGGVAVPLATSYPEVELLYVIDNSDISAILSTEEHSELMQSVANKSSSKFFHLPSVVNISSEKSRNGHSQNGKVHEDRIFLDDIIGGSSEDDPALILYTSGTTGKPKGVVHTHKSIISQVQTLAKSWEYTSADKFLHCLPLHHVHGLFNGLMAPLYSGSSVEFLPKFSVSGVWQRWRESYPTDGSKADDAITVFTGVPTIYARLIQGYNAMDSELQRVSASAANNLRLMMCGSSALPLPVMQEWEVITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIEFKIIADEDGENDNTAMGELCVKSPSLFKEYYKLPEVTKESFTDDGFFKTGDAVTTDEDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPAISECCILGLPDNDYGEIVGAIVVLHDVKEKRDQESKPTLSLEELSTWAKDKIAPYKIPTKLILWEKLPRNAMGKVNKKELKKLVVSEQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5923g00003 544 PANTHER ACYL-COA SYNTHETASE 18 538 - -
Vium5923g00003 544 Pfam AMP-binding enzyme 15 435 IPR000873 -
Vium5923g00003 544 CDD MCS 18 538 - -
Vium5923g00003 544 Gene3D - 5 429 IPR042099 -
Vium5923g00003 544 Pfam AMP-binding enzyme C-terminal domain 446 530 IPR025110 -
Vium5923g00003 544 ProSitePatterns Putative AMP-binding domain signature. 173 184 IPR020845 -
Vium5923g00003 544 FunFam Acyl-CoA synthetase family member 3 9 429 - -
Vium5923g00003 544 PRINTS AMP-binding signature 180 188 IPR020459 -
Vium5923g00003 544 PRINTS AMP-binding signature 168 179 IPR020459 -
Vium5923g00003 544 Gene3D - 432 543 IPR045851 -
Vium5923g00003 544 SUPERFAMILY Acetyl-CoA synthetase-like 6 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5923g00003 Vium-Chr5923 2071 7883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5923g00003 167 540 Monolignol Biosynthesis Gene Families AT4G19010 29.016 2.69e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5923g00003 K18660 - gmx:100813324 919.457