Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5923g00001 ATGAGTCGCTCATTGAAAGCTTTCAACAAACACCTTACTCTCCTCCCTCTCCCTCTACACCTACGCTCTTCTTCTGCCCATCCCTTCATAACTTCCTCTTCTTTCCCTCTTTTCCCACATCACGTTTCCTTCCCCAGGTTCTCTTTCTCTCACCTTCGTCCACTCTCCTCATCTGCACCTGCTACATTAATGGAGGTGGTGAAAGCAATTGCTAGGCAAGAACCTGCAGCTCATGAAAATGTTGCTATCAGAGCTGATCAGAAGAGTTATAGTTACAAGGAACTCCTATCATCAGCACAGCAGATATCTAATCTCTTGTGTGCCAGTGATGCACGGGAGGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCTTCTGCTGAATTTGTTGCTGGAATAATTGGGATTTGGCTCAGCGGAGGTGTTGCTGTTCCCCTTGCAACCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTGATAATTCGGATATATCTGCAATACTGAGTACTGAAGAGCATAGCGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCCAAGTTTTTTCATCTTCCATCTGTTGTCAACATTTCTTCAGAGAAAAGCAGAAATGGACACTCACAGAATGGGAAAGTTCACGAAGACAGGATTTTCTTGGATGATATCATAGGAGGATCAAGTGAAGATGATCCAGCACTGATTTTGTACACCAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAGGTCCAAACTTTGGCAAAATCATGGGAGTACACGTCTGCTGACAAGTTTCTGCATTGTCTACCACTACATCATGTTCATGGGCTATTCAATGGTTTAATGGCCCCTCTCTATTCAGGTTCCTCGGTTGAGTTTTTGCCAAAATTTAGTGTGAGTGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTAAGGCTGACGATGCTATAACAGTGTTCACTGGAGTTCCAACTATCTATGCCCGATTGATACAAGGTTATAATGCAATGGATTCTGAGCTTCAACGTGTTTCAGCATCTGCCGCAAATAACTTGCGTCTTATGATGTGTGGGTCCTCTGCGCTTCCACTACCTGTTATGCAAGAATGGGAAGTCATCACTGGGCATCGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCAAATCCATTGAAAGGTGAGCGCAAGCCAGGAACTGTGGGCAAACCATTTCCTGGTATAGAGTTCAAGATCATTGCAGATGAAGATGGTGAGAATGACAACACTGCAATGGGTGAGCTTTGCGTTAAAAGCCCTTCATTGTTTAAAGAATATTATAAACTTCCTGAGGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACTGGAGATGCAGTTACCACAGATGAAGACGGATATTACATCATTTTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGTTATAAGCTGTCTGCATTAGAAATTGAATCAGTTATCATAGAGCATCCAGCTATCTCAGAATGCTGCATTTTAGGATTACCAGACAATGACTATGGAGAGATTGTAGGTGCAATCGTTGTGCTACATGATGTTAAAGAGAAGAGAGATCAAGAATCAAAGCCTACTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACTAAACTAATCCTGTGGGAAAAACTCCCTCGCAATGCCATGGGGAAGGTAAATAAAAAGGAGCTGAAGAAGCTGGTGGTTTCAGAACAGTGA 1824 0.426 MSRSLKAFNKHLTLLPLPLHLRSSSAHPFITSSSFPLFPHHVSFPRFSFSHLRPLSSSAPATLMEVVKAIARQEPAAHENVAIRADQKSYSYKELLSSAQQISNLLCASDAREGNLGGARIGIVAKPSAEFVAGIIGIWLSGGVAVPLATSYPEVELLYVIDNSDISAILSTEEHSELMQSVANKSSSKFFHLPSVVNISSEKSRNGHSQNGKVHEDRIFLDDIIGGSSEDDPALILYTSGTTGKPKGVVHTHKSIISQVQTLAKSWEYTSADKFLHCLPLHHVHGLFNGLMAPLYSGSSVEFLPKFSVSGVWQRWRESYPTDGSKADDAITVFTGVPTIYARLIQGYNAMDSELQRVSASAANNLRLMMCGSSALPLPVMQEWEVITGHRLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIEFKIIADEDGENDNTAMGELCVKSPSLFKEYYKLPEVTKESFTDDGFFKTGDAVTTDEDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPAISECCILGLPDNDYGEIVGAIVVLHDVKEKRDQESKPTLSLEELSTWAKDKIAPYKIPTKLILWEKLPRNAMGKVNKKELKKLVVSEQ 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5923g00001 607 Pfam AMP-binding enzyme 78 498 IPR000873 -
Vium5923g00001 607 FunFam Acyl-CoA synthetase family member 3 72 492 - -
Vium5923g00001 607 Gene3D - 495 606 IPR045851 -
Vium5923g00001 607 PANTHER ACYL-COA SYNTHETASE 61 601 - -
Vium5923g00001 607 SUPERFAMILY Acetyl-CoA synthetase-like 57 605 - -
Vium5923g00001 607 Gene3D - 67 492 IPR042099 -
Vium5923g00001 607 PRINTS AMP-binding signature 243 251 IPR020459 -
Vium5923g00001 607 PRINTS AMP-binding signature 231 242 IPR020459 -
Vium5923g00001 607 ProSitePatterns Putative AMP-binding domain signature. 236 247 IPR020845 -
Vium5923g00001 607 Pfam AMP-binding enzyme C-terminal domain 509 593 IPR025110 -
Vium5923g00001 607 CDD MCS 81 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5923g00001 Vium-Chr5923 1183 7883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5923g00001 230 603 Monolignol Biosynthesis Gene Families AT4G19010 29.016 2.79e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5923g00001 K18660 - gmx:100813324 995.727