Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5922g00001 ATGATGAAATCTCCTGTTCATTTATTTGCAGTGAGCCTGATGAATTTTTTTGTCTCCCTTCAGGTGGAAAACCTGACTCGAAAAGCCCAGCTTCAAGAAGTGGAGTTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGTTGCCTGTAGGAGTGTCTAGGACTGTCAGATCACCACCCTCTCTTGCTTCCTTTGGCCCAATTCCTGGTTTCCATGACCTTAACAATGCTCCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACTGGATCCAATAACCAGTTACTTTCAAATGGATCAAGCACCATCATCAACAGGAGTGCAGGTCACATAAAACATAGTCAGTCAGATGCTACTAGCACAGGTCACAACAAACATGGTCAATTAGATGCAGGTAGTAGAAATGGAAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCCGAGAATCGTGGAAGAGTGTATGAGCAGTACAATGTGCGCACGATTGACAAATCGACAATAGGTGTTGGGAGTGAGGACCTGCCTCATTCATGA 762 0.4357 MMKSPVHLFAVSLMNFFVSLQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGVSRTVRSPPSLASFGPIPGFHDLNNAPFDRLNIQATSPESDSTGSNNQLLSNGSSTIINRSAGHIKHSQSDATSTGHNKHGQLDAGSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRTIDKSTIGVGSEDLPHS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5922g00001 253 Pfam Unstructured region between BRX_N and BRX domain 94 155 - -
Vium5922g00001 253 MobiDBLite consensus disorder prediction 115 170 - -
Vium5922g00001 253 PANTHER PROTEIN BREVIS RADIX-LIKE 1 127 233 IPR044532 -
Vium5922g00001 253 Pfam Transcription factor BRX N-terminal domain 52 85 IPR027988 -
Vium5922g00001 253 Coils Coil 22 77 - -
Vium5922g00001 253 MobiDBLite consensus disorder prediction 115 183 - -
Vium5922g00001 253 Pfam Transcription factor regulating root and shoot growth via Pin3 178 233 IPR013591 -
Vium5922g00001 253 ProSiteProfiles BRX domain profile. 179 234 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5922g00001 Vium-Chr5922 2778 5189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5922g00001 61 243 Major Intrinsic Protein MIP AT1G31880 34.896 2.28e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5922g00001 - - vum:124842010 494.197