Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium591g00019 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTCAGTGTTCCATGCAGCAGTATGCTCACCATTGTTACGGTTAGATGTGGACACTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATCTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTGAGCGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCTTCAAAATGCAAATCATTTGAGTCCGTAGACCATGAGCAACCTAGGATTCCTCCAATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCGGCTTATAACCGGTTCATTAAAGAGGAAATACAAAGAATTAAGGCCAGTAATCCAGATATCAGCCACAGAGAAGCTTTTAGCACGGCTGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGAGATGCTACTCAAAAGTCTAACGGATTTTACTGA 561 0.4456 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHLSTVAKLQRQHLSVQEACSKELGSSSKCKSFESVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDATQKSNGFY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium591g00019 186 CDD HMG-box_SF 117 153 - -
Vium591g00019 186 Gene3D High mobility group box domain 100 160 IPR036910 -
Vium591g00019 186 SUPERFAMILY HMG-box 108 156 IPR036910 -
Vium591g00019 186 FunFam Axial regulator YABBY 108 179 - -
Vium591g00019 186 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Vium591g00019 186 Pfam YABBY protein 7 163 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium591g00019 Vium-Chr591 124691 133294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium591g00019 1 186 C2C2-YABBY Transcription Factor Family AT1G08465 65.445 1.13e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium591g00019 YABBY 5e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium591g00019 K25796 - gmx:100785458 334.724