Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium591g00016 ATGGATCCCTTCGTCCACAAGCTCCGTCGCCACCTTCGCGCATGGCTTCACCGATCTCGCTCCGGTGCGGTGTTTTTCGTGCGGAGAATTTCGTATAAAGATGTTCGAAGAGCAACGGATGGCTTCCACAGAGTTCTATATAGCAATTCCGATGTTTCTGCGTATGCTGCCAGGTTTGAAGACAGTGGCGGCGTTTGTTTGGTGAGAGAAGTGAAAGGCTTCGATGAAGGAAGCGATCATTTTTACAGACACGTGCAGTTCTTGGGACGCTTGCGACATCGCCACCTTCTCTCGCTCAGAGGTTTTTCCGTCGGGCGCAATCGCAAGAGGTTGCTCATATTTGACAATATAGAAAATGGAAGCTTGAAGGATCATCTAAACGACCCTTTGAAGACTCCCTTAGATTGGAGGACGAGGTTGCAGATAGCCAATGGCGTTGTGGCTGCACTGGAATATTTGTTTCTCTTCAGTGAACCACCCGTATGTCATGTCTCTATCACCTCAAGCAATATTATGTTAGATGAGAACTTCACAGCCAAGTTATCTGACTTTGGCCTTCTTCCATCGGGTGGAAATTCTGATACGATGCCATATTCAGAAGACTTCTTGAAGCAGAAAAGTTGTAGGATTATATTCCAACTTGGAGTACTCATACTAGAATTGGTCACCGGACAGTCTTCAGAGATGGAAGGTTCCGATTTAATAGAATGGATCCAAGAATCACGATTTTACAATTCCATTGATAAGATGATAGACCCAGATCTTGGTAACAACTATGACTGTACGGAGCTTAAAAGTCTTCTCGCTGTGGCAAAACTATGTATAAAATCATGGGATAAGCCCTCATTTACAATTCCTCAGTTATTCCGGCATCTCCAGAGGAAGATTCATATTACTCATCAATAG 906 0.4437 MDPFVHKLRRHLRAWLHRSRSGAVFFVRRISYKDVRRATDGFHRVLYSNSDVSAYAARFEDSGGVCLVREVKGFDEGSDHFYRHVQFLGRLRHRHLLSLRGFSVGRNRKRLLIFDNIENGSLKDHLNDPLKTPLDWRTRLQIANGVVAALEYLFLFSEPPVCHVSITSSNIMLDENFTAKLSDFGLLPSGGNSDTMPYSEDFLKQKSCRIIFQLGVLILELVTGQSSEMEGSDLIEWIQESRFYNSIDKMIDPDLGNNYDCTELKSLLAVAKLCIKSWDKPSFTIPQLFRHLQRKIHITHQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium591g00016 301 FunFam Protein kinase superfamily protein 16 115 - -
Vium591g00016 301 ProSiteProfiles Protein kinase domain profile. 32 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium591g00016 301 PANTHER OS01G0253100 PROTEIN 27 296 - -
Vium591g00016 301 FunFam probable receptor-like protein kinase At1g49730 211 300 - -
Vium591g00016 301 Gene3D Transferase(Phosphotransferase) domain 1 117 207 - -
Vium591g00016 301 Gene3D Transferase(Phosphotransferase) domain 1 211 300 - -
Vium591g00016 301 Pfam Protein tyrosine and serine/threonine kinase 78 191 IPR001245 GO:0004672|GO:0006468
Vium591g00016 301 Gene3D Phosphorylase Kinase; domain 1 10 115 - -
Vium591g00016 301 FunFam Protein kinase superfamily protein 117 207 - -
Vium591g00016 301 SUPERFAMILY Protein kinase-like (PK-like) 24 269 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium591g00016 Vium-Chr591 88825 91877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium591g00016 13 300 Receptor kinase-like Gene Family AT3G19300 35.897 5.01e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vium591g00016 PK_Tyr_Ser-Thr 1.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium591g00016 - - gmx:100791979 548.125