Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium591g00003 ATGGATGTCGATTCCTCGATGGTGCCGGAGACCGATCACGATCCGGCTGTGCAGAACCACACCGCCGATGCTCCGCCGTCGGCTGAGACGGAGGGGGAGCAGCTAGAGGAGCCTCCGTCGTCTGGAGGCGGATCTCCGGCGCCTGCTGCGGTGCCGCAGAGTCCGTCCGGTGGACCGAGGCTGGCGCCAACTTATACTGTTGTGAATGCAATTTTGGAGAAGAAAGAGGACGGTCCGGGGCCGAGGTGCGGCCATACGTTGACGGCGGTGGCGGCGGTCGGAGAGGAGGGGACGCCGGGGTACATTGGTCCTAGGCTGATTTTGTTCGGCGGTGCCACTGCTCTTGAAGGAAATTCTGCGGCTTCAGGGACTCCTTCATCTGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGATGTCCACTGTTATGATGTCTTGACTAATAAGTGGTCTAGGTTAACTCCCTTTGGAGAACCGCCGACTCCAAGGGCTGCACATGTGGCCACTGCTGTGGGAACTATGGTGGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCCGCTGAGGACCTTCATGTTCTTGATCTAACTCAGCAATGGCCACGCTGGCATAGAGTGTCTGTTCAGGGCCCTGGACCTGGGCCACGTTATGGACATGTAATGGCTTTGGTGGGGCAGAGGTATTTAATGGCAATTGGGGGCAATGATGGAAAGAGACCTTTGGCGGATGTATGGGCCTTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTAGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCAGATGGACTTCTTCTGCTCTGTGGAGGGAGAGATGCCAATAGTGTGCCATTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCAGGTGTCTCACCATCATCAAGATATCAGCATGCAGCGGTATTTGTCAATGCAAGGCTCCATGTGTCTGGTGGGGCCCTTGGTGGAGGAAGGATGGTCGAAGACTCATCAAGTGTTGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACTGGTAGGTACAGTGCTGATGCAGCAGGAGGAGATGCTGCAGTTGAGTTGACTCGGCGTTGTAGACATGCAGCTGCAGCAGTTGGTGACTTAATTTTTATTTATGGCGGTTTACGTGGTGGAGTCTTGCTAGATGACCTACTTGTTGCTGAAGATCTTGCAGCTGCTGAAACAACAACTGCTGCTTCACATGCTGCTGCAGCTGCAGCTGCATCTAATGTACAAGCTGCACGCTTACCTGGACGGTATGGATTTGTTGATGATAGAACGAGGCAAGCTGCTCCTGAGGCAGCTGCTGATGGTTCTGTTGTTTTGGGAAATCCAGTTGCACCCCCTGTAAATGGGGACATACATACTGATATCAGCACTGAAAATGCCATGCTTCAGGGACCTCGGCGAACTGCCAAAGGTGTGGAGTATCTGGTCGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTGCAGCACTGGCTGCTGCCAAGGCACGGCAGGAGAATGGAGAGGCTGAAGTGCCTGACAGAGACCGTGGGGCAGAGGCTACCCCAAGTGGGAAACAAGCATCTTCCTTGATCAAGCCTGAATCTGCAGGTTCAAATAACGTTACCCCTGGTGGAGTTCGGTTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGTGCATTAGGTGGAATGGTTAGACAGCTTTCAATTGATCAATTTGAAAATGAAGGCAGGAGGGTTAGTTATGGGACTCCAGAAAGTGCAACTGCTGCCAGGAAGTTATTAGATCGGCAAATGTCTATCAATAGTGTACCGAAAAAGGTCATTGCACACCTCTTAAAGCCTCGGGGATGGAAGCCACCAGTACGGCGGCAGTTTTTTTTGGATTGTAATGAAATTGCTGATCTCTGTGACAGTGCTGAGCGGATATTCTCTGGTGAACCAAGTGTTTTACAACTTAGGGCACCTATTAAAATATTTGGTGATCTACATGGACAATTTGGTGATCTCATGCGCCTTTTTGACGAATATGGTGCACCATCAACTGCTGGTGACATTGCATATATCGATTATCTATTCCTGGGAGATTATGTTGATCGTGGACAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCTTTAAAGGTTGAGTATCCCAACAATGTTCATCTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCACTCTTTGGTTTCCGAATTGAGTGCATAGAGAGGATGGGTGAGAGAGACGGAATCTGGACCTGGCATCGGATAAATAAGCTGTTTAATTGGCTTCCTCTAGCAGCCTTAATTGAGAAAAAAATTATTTGCATGCATGGTGGTATTGGTCGTTCAATAAATCATGTAGAGCAGATTGAAAACATTCAGCGTCCAATTCCCATGGAAGCGGGATCAATTGTGCTTATGGATCTATTGTGGTCTGATCCGACAGAAAATGACAGTGTGGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGGCCTGATCGGGTGATGGAATTTTGCAACAACAATGATCTTCAACTGATTGTTCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATTTGATCACGCTTTTTTCAGCCACAAATTATTGTGGTACCGCAAATAATGCCGGGGCAATATTAGTTTTGGGTAGAGACCTTGTCGTGGTTCCTAAACTGATTCATCCATTGCCACCTGCAATTTCCTCACCAGAAACGTCACCAGAACGTCACATTGAAGATACATGGATGCAGGAGTTGAATGCTAATAGGCCACCAACACCAACTAGAGGCCGCCCCCCAGTAACGAATGACCGAGGTTCGCTGGCTTGGATATAA 2991 0.4948 MDVDSSMVPETDHDPAVQNHTADAPPSAETEGEQLEEPPSSGGGSPAPAAVPQSPSGGPRLAPTYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRLTPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSSRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAAASNVQAARLPGRYGFVDDRTRQAAPEAAADGSVVLGNPVAPPVNGDIHTDISTENAMLQGPRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEAEVPDRDRGAEATPSGKQASSLIKPESAGSNNVTPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSGEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINKLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPPVTNDRGSLAWI 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium591g00003 996 Gene3D - 63 202 IPR015915 GO:0005515
Vium591g00003 996 Pfam Galactose oxidase, central domain 217 270 - -
Vium591g00003 996 SMART pp2a_7 665 949 IPR006186 GO:0016787
Vium591g00003 996 MobiDBLite consensus disorder prediction 539 579 - -
Vium591g00003 996 FunFam Serine/threonine-protein phosphatase 61 258 - -
Vium591g00003 996 MobiDBLite consensus disorder prediction 557 577 - -
Vium591g00003 996 Gene3D - 629 967 IPR029052 -
Vium591g00003 996 FunFam Serine/threonine-protein phosphatase 629 969 - -
Vium591g00003 996 PRINTS Serine/threonine phosphatase family signature 889 909 IPR006186 GO:0016787
Vium591g00003 996 PRINTS Serine/threonine phosphatase family signature 911 927 IPR006186 GO:0016787
Vium591g00003 996 PRINTS Serine/threonine phosphatase family signature 799 825 IPR006186 GO:0016787
Vium591g00003 996 PRINTS Serine/threonine phosphatase family signature 693 720 IPR006186 GO:0016787
Vium591g00003 996 PRINTS Serine/threonine phosphatase family signature 728 755 IPR006186 GO:0016787
Vium591g00003 996 PRINTS Serine/threonine phosphatase family signature 761 785 IPR006186 GO:0016787
Vium591g00003 996 Gene3D - 203 452 IPR015915 GO:0005515
Vium591g00003 996 Pfam Calcineurin-like phosphoesterase 693 900 IPR004843 GO:0016787
Vium591g00003 996 Pfam Kelch motif 324 369 IPR011498 GO:0005515
Vium591g00003 996 ProSitePatterns Serine/threonine specific protein phosphatases signature. 762 767 IPR006186 GO:0016787
Vium591g00003 996 MobiDBLite consensus disorder prediction 972 996 - -
Vium591g00003 996 MobiDBLite consensus disorder prediction 541 555 - -
Vium591g00003 996 FunFam Serine/threonine-protein phosphatase 262 462 - -
Vium591g00003 996 PIRSF STPPP_BSU1 27 996 IPR012391 GO:0004721|GO:0009742
Vium591g00003 996 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 996 - -
Vium591g00003 996 MobiDBLite consensus disorder prediction 1 62 - -
Vium591g00003 996 SUPERFAMILY Metallo-dependent phosphatases 650 956 IPR029052 -
Vium591g00003 996 CDD MPP_Bsu1_C 645 947 IPR041758 -
Vium591g00003 996 SUPERFAMILY Kelch motif 137 426 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium591g00003 Vium-Chr591 23648 36472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium591g00003 657 892 Calmodulin-binding Proteins AT5G63870 29.412 5.75e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium591g00003 - - gmx:100776048 1816.97