Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5917g00037 ATGTCCAAAGTGCCCCTCTTTATTTCATTTCATTTCTTCCTGTTATTCAGCGTCGCTGTACCCTCTCGGGTAATTTCAGAAACTGAACAAACAATCCTACTCACTCTCAAACGTGAACTGGGAGACCCACCGTCGCTCCGATCATGGAAACCGTCGCCGTCTGCGCCGTGCGATTGGACGGAGATTGGATGCAACAGCGGCGGCGCCGTCACGAAGCTAGTCCTCTCCAGCAAGGGCATCACCACCACCAAGAGCCTCCCTTCCACAATCTGCAACCTCACACACCTACTCGAGCTTAACCTCTTCAACAACTTTATTGCCGGCGAGTTTCCGACAACCTTGTACGAATGCTCCAACCTCCGGTACCTCAACCTGTCGCAGAACTACCTCGCAGGAGCGATCCCCGCCGACGTGGACCGCCTCAAAACCCTCACTTTCCTCGACCTCACCGCCAACTCCTTCTCCGGAGAGATCCCGGCCGCGATCGGGAACCTGCTGGAACTGCAAACGCTGTATCTTTCCGCAAACAACTTCGAGGGAACCGTCCCCAGGGAAATCGGAAACTTGTTGAACCTCGAATTTTTGGGTTTGGGTTATAATCTTAAACTCGCGCCGTGGGAGTTCCCGTTGGAGTTTAGGAAATTAAGAAATTTGAGGTCTATGTATATGCCGCAGTGTAACTTGATCGGAGAGATTCCAGAATATTTCGGGAATATTTTCACGAACCTCGAACGGTTGGATTTGGGGAAGAACAAGATATCAGGGAGCATTCCGAGGAATTTGTTCTCGCTGAGTAAGTTGAGGTTCTTGTACCTGTTCAGTAACAGATTGTCGGGTGCGATTCCTAGTGATACGATGCAGTGTTTGGAATTAATCGACCTTGATTTCGCGAAGAATAATTTGACGGGTTCCATACCGCCAGAGTTTGGAAAATTAAAGAACTTGAGTACCTTGCACTTGTACGAAAATCACTTAGTCGGTGAGATTCCCGTAAGTTTAAGCCAAATTCCTAATCTCATCTATTTCAGGGTTTTTAGCAATAACTTGAGTGGAACACTGCCTCCAGAACTAGGCTTGCATTCCAAGCTTACAGTGTTTGAGGTTTCTGAGAACCAGCTCAGTGGTGGGTTGCCGGAACATTTATGTGCAGGTGGTGCCCTTATTGGTGTGGTTGCATTTTCCAACAATTTTAGTGGGGTTTTGCCTGAGTGGATTGGGAATTGTCCTTCTCTAGCCACGGTTCAGCTTTATAATAACAAGTTTTCGGGTGAGGTTCCTTTGGGTTTGTGGACTATGAATAACCTTTCGTCCTTGATTTTGAGCAACAACTCTTTTTCTGGGCCTCTTCCGAGTCAAGTGTTTTGGAATATGACGAGGATTGAGATCGCCAACAACAACTTCTCGGGTGGGATATCTGTTGGGATTACTTCGGCCAAAAATCTGATGTTTCTTGATGCCAGAAACAACATGCTTTTGGGTGAAATTCCAAGGGAATTGACTCAACTTTCACGGCTTACTGCTCTCATGCTGGATGGTAACCAACTTTCGGGTGCACTTCCATCTGAGATTATTTCGTGGCAATCACTGAACATTTTGACACTATCACGAAACAAACTTTCTGGCCAGATTACCACGGCTATTACTGCTCTTCCCCGCCTGGCTTACCTGGACTTGTCTCAAAACGACATATCAGGTGAAATACCTCCTCAGTTTGATAGGTTGCGGTTTGTTTTCCTCAACTTGTCCTCCAACCGGCTATCTGGGAAAATCCCTGATGAGTTCAATAACCTCGCATTTGAAAATAGTTTCTTGAACAATCCTCATCTATGTGCTTACAATCCAAACGTCCACCTTGACAACTGCTTGACCAAAACCGCGTCAGCGGCACCACAGTCGAGCAATTCGTCTTCGAAATCACTGGCCCTGATTCTGGCTGCCACTGCGGTTGTGCTATCGGCAATAGCTTCCTTGCTCTTCTATATGTTGAAAACGCAATGGGGCAAAAAGCACTGCGGGCATAAAAATAAGGTTGCAACGTGGAGGCTCACTTCATTCCAGAAGCTTGATCTCACGGAAATAAACTTCCTCTCGAGTTTGACAGACAATAACCTCATAGGGAGTGGAGGGTTTGGGAAAGTTTACCGGATTGCTTCAAATCGTCCAGGTGAGTATGTTGCGGTGAAGCGGATCTGGAATCGCGAGGATGTGGATGACAAGTTGGAGAAAGAGTTCCAGGCTGAGGTTGAGATCCTGGGCAACATTCGGCACTCGAATATAGTAAAGCTTTTGTGCTGCTATGCAAGTGAGAACTCCAAACTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGATAAATGGCTTCATGCAGAGGAAAAAACATCGCCTCCTGGGTTGAGTTGGCCAACGAGGTTGAATATTGCCATTGGGGCTGCACAAGGCCTGTGTTACATGCACCATGAATGCTCACCCCCCGTCATCCACCGAGATGTCAAATCTAGCAATATACTGTTGGACTCAGAGTTCAGAGCTAAAATAGCAGATTTTGGGCTCGCCAAGATGTTGGCAAAGCCCGGTGAACTAAACACCATGTCTGCACTAGCAGGCTCTTTTGGCTACATTCCACCAGAATATGCTTATTCAACTAAGATTAACGAGAAAGTGGATGTTTATAGCTTTGGTGTTGTGCTCTTGGAGCTTGTTACGGGAAGGAAGCCTAATATAAGCGGCGAGCGTGCATGCAGCTTAGTTGAATGGGCGTGGGAGCATTTTAATGAAGCCAAGAGCCTTACTGATGCATTCGATGAGAATATCAAAGAACCACGTTATGCGCAAGAGATGGCTAATGTCTTCAAATTGGGCCTCCTTTGCACAAGCACCTTGCCGTCAACTAGACCTTCCACGAAAGAGATTTTGCAAGTACTTCGGTGTTGTCATTCAGGTTCTACACGTAGAAAAATGGGAAATGAATTTGATATCGCTCCTCTACTTGGTGACACAAGGTACGTTTGTAGTTACAAGGAGAGTAAGGCTGCAACCAATAACTCATCTTGGTGA 3057 0.4648 MSKVPLFISFHFFLLFSVAVPSRVISETEQTILLTLKRELGDPPSLRSWKPSPSAPCDWTEIGCNSGGAVTKLVLSSKGITTTKSLPSTICNLTHLLELNLFNNFIAGEFPTTLYECSNLRYLNLSQNYLAGAIPADVDRLKTLTFLDLTANSFSGEIPAAIGNLLELQTLYLSANNFEGTVPREIGNLLNLEFLGLGYNLKLAPWEFPLEFRKLRNLRSMYMPQCNLIGEIPEYFGNIFTNLERLDLGKNKISGSIPRNLFSLSKLRFLYLFSNRLSGAIPSDTMQCLELIDLDFAKNNLTGSIPPEFGKLKNLSTLHLYENHLVGEIPVSLSQIPNLIYFRVFSNNLSGTLPPELGLHSKLTVFEVSENQLSGGLPEHLCAGGALIGVVAFSNNFSGVLPEWIGNCPSLATVQLYNNKFSGEVPLGLWTMNNLSSLILSNNSFSGPLPSQVFWNMTRIEIANNNFSGGISVGITSAKNLMFLDARNNMLLGEIPRELTQLSRLTALMLDGNQLSGALPSEIISWQSLNILTLSRNKLSGQITTAITALPRLAYLDLSQNDISGEIPPQFDRLRFVFLNLSSNRLSGKIPDEFNNLAFENSFLNNPHLCAYNPNVHLDNCLTKTASAAPQSSNSSSKSLALILAATAVVLSAIASLLFYMLKTQWGKKHCGHKNKVATWRLTSFQKLDLTEINFLSSLTDNNLIGSGGFGKVYRIASNRPGEYVAVKRIWNREDVDDKLEKEFQAEVEILGNIRHSNIVKLLCCYASENSKLLVYEYMENQSLDKWLHAEEKTSPPGLSWPTRLNIAIGAAQGLCYMHHECSPPVIHRDVKSSNILLDSEFRAKIADFGLAKMLAKPGELNTMSALAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGRKPNISGERACSLVEWAWEHFNEAKSLTDAFDENIKEPRYAQEMANVFKLGLLCTSTLPSTRPSTKEILQVLRCCHSGSTRRKMGNEFDIAPLLGDTRYVCSYKESKAATNNSSW 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5917g00037 1018 FunFam Receptor-like protein kinase HSL1 679 778 - -
Vium5917g00037 1018 Pfam Protein kinase domain 701 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5917g00037 1018 SMART LRR_typ_2 432 456 IPR003591 -
Vium5917g00037 1018 SMART LRR_typ_2 312 336 IPR003591 -
Vium5917g00037 1018 SMART LRR_typ_2 165 189 IPR003591 -
Vium5917g00037 1018 SMART LRR_typ_2 502 526 IPR003591 -
Vium5917g00037 1018 SMART LRR_typ_2 93 117 IPR003591 -
Vium5917g00037 1018 SMART LRR_typ_2 240 264 IPR003591 -
Vium5917g00037 1018 SMART LRR_typ_2 550 573 IPR003591 -
Vium5917g00037 1018 FunFam Kinase family with leucine-rich repeat domain-containing protein 779 990 - -
Vium5917g00037 1018 SUPERFAMILY Protein kinase-like (PK-like) 693 975 IPR011009 -
Vium5917g00037 1018 SUPERFAMILY L domain-like 32 374 - -
Vium5917g00037 1018 SMART serkin_6 699 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5917g00037 1018 SUPERFAMILY L domain-like 292 599 - -
Vium5917g00037 1018 Pfam Leucine rich repeat 226 277 IPR001611 GO:0005515
Vium5917g00037 1018 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 383 625 - -
Vium5917g00037 1018 FunFam Receptor-like protein kinase HSL1 isoform A 26 180 - -
Vium5917g00037 1018 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Vium5917g00037 1018 ProSiteProfiles Protein kinase domain profile. 699 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5917g00037 1018 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 208 970 - -
Vium5917g00037 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Vium5917g00037 1018 Gene3D Ribonuclease Inhibitor 25 204 IPR032675 -
Vium5917g00037 1018 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Vium5917g00037 1018 Gene3D Transferase(Phosphotransferase) domain 1 779 994 - -
Vium5917g00037 1018 Gene3D Ribonuclease Inhibitor 389 621 IPR032675 -
Vium5917g00037 1018 Gene3D Ribonuclease Inhibitor 205 388 IPR032675 -
Vium5917g00037 1018 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 281 - -
Vium5917g00037 1018 CDD STKc_IRAK 705 975 - -
Vium5917g00037 1018 Gene3D Phosphorylase Kinase; domain 1 679 778 - -
Vium5917g00037 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 283 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5917g00037 Vium-Chr5917 156235 159852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5917g00037 18 997 Receptor kinase-like Gene Family AT5G25930 51.773 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium5917g00037 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5917g00037 - - gmx:100782466 1557.35