Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5917g00023 ATGGCCATCGCAACAGAGACTCAGCCTCAACAACACAAGGATTCTTACGAGTTGTCTGGTTCAGCTGCGGAGAGGAGGTGGACGCTGAACGATTTCGAGGTTGGAAAGCCTCTTGGAAGGGGGAAATTCGGCCACGTCTATTTGGCAAGAGAGAAGAGTAGTAATCACATTTTTGCTTTGAAAGTACTCTTTAAGAGCCAATTGCAGCAATCCTAAGTTGTGCATCAACTTCGGCGAGAAGTTGAGATTCAAAGTCATCTCCGACATCCCCACATCTTGCGACTCTATGGGTACTTTTATGACCAGAAAAGAGTGTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAAAAGTGCAAGTATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCGTCATTGGCTCGGGCCCTAATATATTGCCATGGAAAACATGTAATCCATAGGGATATTAAACCAGAAAACCTTCTTGTTGGTGCACAGGGTGAGTTAAAAATAGCGGACTTTGGGTGGTCAGTGCACACATTTAATCGCAGGCGGACAATGTGTGGCACACTGGATTACCTTCCTCCCGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTGCTGTGTTATGAGTTTCTTTATGGGGTCCCTCCCTTTGAGGCTAAAGAACACTCGGATACTTACAGGAGGATAGTACATGTGGATCTTAAGTTCCCTCCTAAACCAATTGTATCCTCTGGTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTCATCGCAACGGTTACCACTGCACAAGCTCCTTGATCACCCTTGGATTGTTCAGAATGCAGAGCCCTCTGGTGTATATAGGGGCTAG 888 0.4538 MAIATETQPQQHKDSYELSGSAAERRWTLNDFEVGKPLGRGKFGHVYLAREKSSNHIFALKVLFKSQLQQSXVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVHVDLKFPPKPIVSSGAKDLISQMLVKDSSQRLPLHKLLDHPWIVQNAEPSGVYRG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5917g00023 295 SUPERFAMILY Protein kinase-like (PK-like) 19 287 IPR011009 -
Vium5917g00023 295 CDD STKc_Aurora 31 284 - -
Vium5917g00023 295 PIRSF ILK 4 280 - -
Vium5917g00023 295 SMART serkin_6 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5917g00023 295 FunFam Aurora kinase A 24 115 - -
Vium5917g00023 295 Gene3D Transferase(Phosphotransferase) domain 1 116 291 - -
Vium5917g00023 295 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 294 IPR030616 GO:0004672
Vium5917g00023 295 ProSiteProfiles Protein kinase domain profile. 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5917g00023 295 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Vium5917g00023 295 Gene3D Phosphorylase Kinase; domain 1 20 115 - -
Vium5917g00023 295 Pfam Protein kinase domain 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5917g00023 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vium5917g00023 295 FunFam serine/threonine-protein kinase Aurora-1 116 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5917g00023 Vium-Chr5917 123695 126380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5917g00023 26 272 AGC Kinase Gene Family AT1G48490 35.145 2.68e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vium5917g00023 Pkinase 2.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5917g00023 K08850 - gmx:100775451 570.852