Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5910g00011 ATGAACGAGAGTGCAAATCTGGGATTTTCCATGAACGAGAGTGCGGATCTGGGATTGCCAGCGGCGATTGCCAGCGTCATGGAGATGCGAAGCCCCAACGCGATGCGAAGCCACGTCAGGGAGATTGCCAGCGGCGCCGACATCACCGACTATGTGGTCCAGTTCGCGCGGAGGCGTTTGCGCGGCGTGTCCATTCTCAGCGGCAGCGGGGCCGTCGTGAACGTTACTCTTCGCCAGCCCACGGCTCCTGGCGCCGTCCTCTCCCTCACCGGCTCGTTTCTCCCCGGACCATCCCCTCCTGGTGCCACCGGTCTCACCATCTATCTCGCGGGAGGTCAGGGACAGATCGTTGGCGGCGGGGTGGTGGGCTCACTGGTGGTGGCTGGTCCAGTTTTGATAATGGCGGGTACGTTTTCCAATGCAACTTACGAGAGATTACCTTTGGAGGAGGATGATCAGGAGCAGGGTGGTGGCGGTGGGTCTCTGCCGGGGATGGGAGGCGGTCCTGGCGAAGCTTCGTCGTCAATTTCGGTGTATAATAATAATGTTCCTCCGAATCTGGATCTTCCAAACGAGCAACAGGTGAACCATGAAGCTTGTTCTTCTCCTTGGGGTCATGCTCCTCGTGCCATACCTCCTTTCCAAAGATGA 651 0.5853 MNESANLGFSMNESADLGLPAAIASVMEMRSPNAMRSHVREIASGADITDYVVQFARRRLRGVSILSGSGAVVNVTLRQPTAPGAVLSLTGSFLPGPSPPGATGLTIYLAGGQGQIVGGGVVGSLVVAGPVLIMAGTFSNATYERLPLEEDDQEQGGGGGSLPGMGGGPGEASSSISVYNNNVPPNLDLPNEQQVNHEACSSPWGHAPRAIPPFQR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5910g00011 216 ProSiteProfiles PPC domain profile profile. 32 163 IPR005175 -
Vium5910g00011 216 MobiDBLite consensus disorder prediction 173 200 - -
Vium5910g00011 216 CDD DUF296 36 110 IPR005175 -
Vium5910g00011 216 SUPERFAMILY AF0104/ALDC/Ptd012-like 32 152 - -
Vium5910g00011 216 Gene3D - 35 155 - -
Vium5910g00011 216 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 187 IPR014476 GO:0003680
Vium5910g00011 216 MobiDBLite consensus disorder prediction 150 216 - -
Vium5910g00011 216 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 140 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5910g00011 Vium-Chr5910 75408 76058 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5910g00011 31 214 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 52.500 1.34e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5910g00011 - - vum:124841969 364.77