LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5910g00003	ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGATTCAAATTGGTTCGTGGAAGAGAGCCAAAGCACAGAATGGAGTAGGGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTGGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGAGCGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGAAGCAGAAGAAGACCTGCAGCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTCAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAATTTCGTGGTGACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCCAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTGCTGCATCGGATAAGATAAAGTCTCCGTTCATGATTACACCGCAGCAGAAGCTGAATAGTATGTCAAAAGTGCAGTTGGACTGGACCAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAACAGAGACAACTTGTTTGTGTCGTCTTCATCTGATATCATGGCCCTGAAAATGCAAGGCCAGGATCTCTATGACTGTGCTTTACACGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGCATGGCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCATGCACTGTAG	891	0.44	MIFPRFCTNLKDSNWFVEESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVLDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVHNHNYDGSRRRPAAVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPFMITPQQKLNSMSKVQLDWTSHCNDGSLMVFNPNRDNLFVSSSSDIMALKMQGQDLYDCALHEAYAKVKVPGFGMAPRDFNNEAIFGIHAL	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5910g00003	296	Pfam	Myb-like DNA-binding domain	124	168	IPR001005	-
	Vium5910g00003	296	SMART	sant	21	73	IPR001005	-
	Vium5910g00003	296	SMART	sant	121	171	IPR001005	-
	Vium5910g00003	296	MobiDBLite	consensus disorder prediction	105	124	-	-
	Vium5910g00003	296	CDD	SANT	124	168	IPR001005	-
	Vium5910g00003	296	FunFam	transcription factor MYB1R1	123	174	-	-
	Vium5910g00003	296	FunFam	Transcription factor SRM1	17	84	-	-
	Vium5910g00003	296	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	117	173	IPR017930	-
	Vium5910g00003	296	SUPERFAMILY	Homeodomain-like	119	173	IPR009057	-
	Vium5910g00003	296	CDD	SANT	24	70	IPR001005	-
	Vium5910g00003	296	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	120	172	IPR006447	GO:0003677
	Vium5910g00003	296	ProSiteProfiles	SANT domain profile.	20	75	IPR017884	-
	Vium5910g00003	296	ProSiteProfiles	Myb-like domain profile.	117	169	IPR001005	-
	Vium5910g00003	296	SUPERFAMILY	Homeodomain-like	23	77	IPR009057	-
	Vium5910g00003	296	Gene3D	-	17	84	-	-
	Vium5910g00003	296	Gene3D	-	123	174	-	-
	Vium5910g00003	296	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	19	230	IPR043363	-
	Vium5910g00003	296	ProSiteProfiles	SANT domain profile.	125	173	IPR017884	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5910g00003	Vium-Chr5910	34259	36078	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vium5910g00003		Myb_DNA-binding	1.2e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5910g00003	-		-	ccaj:109813886	526.554