LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5910g00002	ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTGTACCCTCCTTGTTTTATGCCAGATTCAAATTGGTTCGTGGAAGAGAGCCAAAGCACAGAATGGAGTAGGGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTGGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGAGCGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGAAGCAGAAGAAGACCTGCAGCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTCAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAATTTCGTGGTGACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCCAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTGCTGCATCGGATAAGATAAAGTCTCCGTTCATGATTACACCGCAGCAGAAGCTGAATAGTATGTCAAAAGTGCAGTTGGACTGGACCAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAACAGAGACAACTTGTTTGTGTCGTCTTCATCTGATATCATGGCCCTGAAAATGCAAGGCCAGGATCTCTATGACTGTGCTTTACACGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGCATGGCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCATGCACTGTAG	933	0.4405	MIFPRFCTNLKGMELETLYPPCFMPDSNWFVEESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVLDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVHNHNYDGSRRRPAAVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPFMITPQQKLNSMSKVQLDWTSHCNDGSLMVFNPNRDNLFVSSSSDIMALKMQGQDLYDCALHEAYAKVKVPGFGMAPRDFNNEAIFGIHAL	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5910g00002	310	CDD	SANT	38	84	IPR001005	-
	Vium5910g00002	310	ProSiteProfiles	Myb-like domain profile.	131	183	IPR001005	-
	Vium5910g00002	310	ProSiteProfiles	SANT domain profile.	139	187	IPR017884	-
	Vium5910g00002	310	SUPERFAMILY	Homeodomain-like	133	187	IPR009057	-
	Vium5910g00002	310	Gene3D	-	137	188	-	-
	Vium5910g00002	310	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	33	244	IPR043363	-
	Vium5910g00002	310	ProSiteProfiles	SANT domain profile.	34	89	IPR017884	-
	Vium5910g00002	310	SUPERFAMILY	Homeodomain-like	37	91	IPR009057	-
	Vium5910g00002	310	FunFam	Transcription factor SRM1	31	98	-	-
	Vium5910g00002	310	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	134	186	IPR006447	GO:0003677
	Vium5910g00002	310	Gene3D	-	31	98	-	-
	Vium5910g00002	310	Pfam	Myb-like DNA-binding domain	138	182	IPR001005	-
	Vium5910g00002	310	MobiDBLite	consensus disorder prediction	119	138	-	-
	Vium5910g00002	310	FunFam	transcription factor MYB1R1	137	188	-	-
	Vium5910g00002	310	CDD	SANT	138	182	IPR001005	-
	Vium5910g00002	310	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	131	187	IPR017930	-
	Vium5910g00002	310	SMART	sant	35	87	IPR001005	-
	Vium5910g00002	310	SMART	sant	135	185	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5910g00002	Vium-Chr5910	34259	36079	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vium5910g00002		Myb_DNA-binding	1.3e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5910g00002	-		-	ccaj:109813886	561.607