Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5906g00004 ATGGGTATCATAAAGGTTATCTTTTGCAGCATTTTGGTTTTTCATATTTTGGTCGTAGTGAGCAGTGAAGAGAAAAAAACTGAAGAAGAATTCATCAGACAATTATTTGATCCTTCATCTGGACTGTTAACTGAGGATACGGTAAACCATCTGAAGGAAGAGGATGCCTCTAAGATCTGGCATTCAACATACATGCCGGCGTCACCTTCATCTAGAAGATATCTGGGTCAAATTTTTCCAAAGCAACTATCAGAAACAGCGAACAAGCAACACGAATTACATATAAGCATTAAAGTTAAAGAAGATACAAAAGCATCCGGAACTAGCATGGCAATACCTCTAGTGGTAGCAGTTGTAGCTGTGGTATTTGTCATTTTATGTTGTTATAGATGTTGTGGGAGTGGACAAGTTAGCCAAAATGATGAGAGACCCCTTCTAAGCATGAGCATGAATGACTACTCAGTTGGTAATACAAAAGTTTCATTCTTGAAGCGATATTTGAATGTTACAGGTTCTTCTTCGAACAGTAATATTCAATTCAAAAGCTCAATGAAAGAAGGAGAAATCGGTATTCAGTCGTCGAGTATTCGATCAGTTGATGAGAAGAGAAACTCTGTGTCGTTGAATGAAAGTGAATCGGGAGAAGTTGGTAGTTGTTCTGTGAGAGCATCATTTGAACTAAAACCTCCTCCTGGGAGAGCAGTGTCAAATAATGGATTGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTCTTCCTCCTCCTCCTGGAAGGTCTGATCTTCTTCCTCTGAAACCTCCACCTGGAAGACCAGATCTTGCTCCTTCTCCACCTCCTCCACCTCCTCCACCTCCTCCACCTCCTCCATCTCCTCCTTCTACTTCTAATTCTGCACCACCTCCTCCTCCTCCTCCTCGTGCACCACCAAAGCCTACCGGTGCTGGTCCTCCACCTCCTCCACCTCCTGGCCACGGCCCTGGCCCTAGAGCACCACCCCCTCCTCCTGGAAAAGGCCCTAGAGCTCCACCACCACCTCCATTTAGAGCCAAGCCTGGTCCTCCTGGTGCTGGTCCTAGACCTCCTCCACCGCCAGGTGGTGGTGCAGGTCATGCAAGAGCTCCTTCCAATCCAAAGGTTGTCGAGGAAGCCGATTACGAAGGTGAAGGGTATGTTCCTAAAACTAAGTTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACGATCAAGCAATGGTATGGAATCAACTCAAAGCAGGATCGTTCCAGTTTAATGAAGAAATGATCGAGACACTCTTTGGCTTTAATTCTGCGAGTACGGAAAAAGGAAAGGGCCAACCAAAAAAAGAGGCTTCCCCAACTCCCCAACTTATACAAATCGTTAACGCAAAGAAAGCACAGAATTTGTCTATTCTATTAAAAGCATTGAATGTCACCGCAGATGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTTCCCACAGAATTCCTTCAAACATTGTTGAAGATGGCACCGACGCAGGACGAAGAACTTAAGCTTAGAGTTTTCAGTGGTAATCTAGCCCAACTCACCCCTGCAGATAGGTTCCTTAAAGCCATAGTTGACATTCCTTGTTCTTTTAAACGAATGGAAGCATTAATTTACATGGGTACTCTTCAAGAGGATCTCACCAGTACACGAGATTCCTTTGCAATTTTAGAGGTTGCTTGTAAAAAGCTGAGAAGTAGTCGATTATTCCTGAAACTTCTTGAAGCTGTTCTGAAAACTGGGAATCGTATGAACGATGGGACATTTCGTGGTGGTGCACAAGCATTCAAACTTGATACACTGTTGAAACTATCTGATGTGAAAGGAGTAGATGGGAAGACCACACTCTTGCACTTCGTTGTTCAAGAGATAGTACGCACTGAGGGCATAAGAGCAGCACGCATGGCAAAAGAGAATCACAGTTTCTCCAGCGTAAAAACAGATGACCTTCTTGAGGACGTCTCGATTGAATCAGATGACCACTATCGCGAACTTGGTCTTCAAGTGGTTTCATATTTAAGCACTGAACTTGAAAGCGTGAAGAAAGCAGCAGCTTTAGATGCTGATGGGTTGGTAGGAACAACTTCAAGAGTAGGGCATGGTCTGATAAAAACAAGAGACTTTGTAAACAAAGAGTTGAGCAATACGAAGGGTGATAAAGGGTTTTGTGAGACAGTGAAGAGCTTCGTAGAGAAAGCTGAGGCTGATGTCAAAAGTTTGCTAGAAGAGGAGAAGAAAATCATGGGTCTGGTGAAGAGCACTGGTGATTACTTTCATGGGGATACAGGGAAGGATGAAGGGTTGAGATTATTTAACATAGTACGCGATTTCTTAGTAATGTTGGATAAGGTGTGCAAGGAGATACAACTTGCACCACCAAAGAAGCCAGCACCAAAAAGTGCTAAGCAAGAAACACCTAATCATTCTAGAAAACCTTCTTCCTCTGATAATCTTCCTCCTGCTCATGATTTAATTCGTCAAAGAATTTCTCCAGTAATTGCAAATAGGAGGACAGATGATTTTAGTTCAGATGATGACAGTCCTTAA 2577 0.4327 MGIIKVIFCSILVFHILVVVSSEEKKTEEEFIRQLFDPSSGLLTEDTVNHLKEEDASKIWHSTYMPASPSSRRYLGQIFPKQLSETANKQHELHISIKVKEDTKASGTSMAIPLVVAVVAVVFVILCCYRCCGSGQVSQNDERPLLSMSMNDYSVGNTKVSFLKRYLNVTGSSSNSNIQFKSSMKEGEIGIQSSSIRSVDEKRNSVSLNESESGEVGSCSVRASFELKPPPGRAVSNNGLLPLKPPPGRPDLLPPPPGRSDLLPLKPPPGRPDLAPSPPPPPPPPPPPPPSPPSTSNSAPPPPPPPRAPPKPTGAGPPPPPPPGHGPGPRAPPPPPGKGPRAPPPPPFRAKPGPPGAGPRPPPPPGGGAGHARAPSNPKVVEEADYEGEGYVPKTKLKPFFWDKVQANDQAMVWNQLKAGSFQFNEEMIETLFGFNSASTEKGKGQPKKEASPTPQLIQIVNAKKAQNLSILLKALNVTADEVCDALLEGNELPTEFLQTLLKMAPTQDEELKLRVFSGNLAQLTPADRFLKAIVDIPCSFKRMEALIYMGTLQEDLTSTRDSFAILEVACKKLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIVRTEGIRAARMAKENHSFSSVKTDDLLEDVSIESDDHYRELGLQVVSYLSTELESVKKAAALDADGLVGTTSRVGHGLIKTRDFVNKELSNTKGDKGFCETVKSFVEKAEADVKSLLEEEKKIMGLVKSTGDYFHGDTGKDEGLRLFNIVRDFLVMLDKVCKEIQLAPPKKPAPKSAKQETPNHSRKPSSSDNLPPAHDLIRQRISPVIANRRTDDFSSDDDSP 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5906g00004 858 SMART it6_source 387 810 IPR015425 -
Vium5906g00004 858 MobiDBLite consensus disorder prediction 802 858 - -
Vium5906g00004 858 ProSiteProfiles Formin homology-2 (FH2) domain profile. 387 817 IPR015425 -
Vium5906g00004 858 PRINTS Proline rich extensin signature 269 281 - -
Vium5906g00004 858 PRINTS Proline rich extensin signature 242 258 - -
Vium5906g00004 858 PRINTS Proline rich extensin signature 281 302 - -
Vium5906g00004 858 PRINTS Proline rich extensin signature 306 322 - -
Vium5906g00004 858 PANTHER FORMIN-RELATED 58 838 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium5906g00004 858 Pfam Formin Homology 2 Domain 391 791 IPR015425 -
Vium5906g00004 858 SUPERFAMILY Formin homology 2 domain (FH2 domain) 455 799 - -
Vium5906g00004 858 MobiDBLite consensus disorder prediction 199 218 - -
Vium5906g00004 858 MobiDBLite consensus disorder prediction 243 369 - -
Vium5906g00004 858 ProSitePatterns Serine proteases, subtilase family, serine active site. 107 117 IPR023828 -
Vium5906g00004 858 Gene3D Formin, FH2 domain 392 826 IPR042201 -
Vium5906g00004 858 MobiDBLite consensus disorder prediction 224 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5906g00004 Vium-Chr5906 36876 39996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5906g00004 358 849 FH2 protein (formin) Gene Family AT5G54650 59.880 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5906g00004 - - vun:114183601 828.165