Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5904g00001 ATGGCTTCACGCAGACTCGTTTCGTCTCTGCTTCGATCTTCTATCCGCAGATCTCAATCCAAACCTTCAATTGCCGCATCTGCGTCCAGAATCTCTTCCACCAACCGCGCTTCGCCGCACGGATTCTTGCTCAACCGCATCGCGGAGTACGCCACCGCGTCTGCCGCTGCTGCCGCTCCTCCTTCTGCGCCTCCGCAGAAGAAGGAAGTTGGCGGTGGTGGGAAGATCACCGATGAGTTCACTGGGAAGGGCGCGATCGGACAGGTTTGCCAGGTAATTGGTGCCGTCGTTGATGTCAGATTTGACGAGGGTTTGCCTCCGATCCTGACTGCACTCGAGGTTCTGGATCACTCCTCCAGACTGGTGTTGGAAGTCGCTCAGCATTTGGGTGAGGGCGTTGTCCGAACCATTGCTATGGATGCCACTGAAGGAGTCGTTAGAGGGTGGCGCGTCCTCAACACCGGCTCCCCCATCACTGTTCCTGTTGGTAGGGCTACCCTTGGCCGTATCATTAATGTCATTGGCGAGGCTATTGACCAGAAGGGTGACCTCACAACCGAGCATTATTTGCCTATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAATCAACTGAGCAGCAGATTCTTGCTACTGGGATCAAGGTTGTTGACCTGCTTGCACCTTATCAAAGAGGAGGAAAGATTGGGCTGTTTGGTGGGGCTGGTGTAGGAAAAACTGTCCTTATTATGGAACTTATTAACAATGTTGCAAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGTGAGGGTAATGACTTGTATAGAGAAATGGTTGAGAGTGGTGTTATCAAGCTTGGTGAGAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCTCGTGTTGGTCTTACTGGGCTTACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTTATAGACAACATTTTCCGTTTTACCCAAGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGAATCCCATCTGCTGTCGGTTACCAACCAACCTTGGCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACAACCAAAAAGGGTTCAATCACCTCTGTCCAAGCTATCTATGTGCCAGCTGATGACTTGACAGATCCTGCTCCAGCAACAACCTTTGCTCATCTTGATGCTACAACTGTGTTGTCACGACAGATCTCCGAGCTTGGTATCTATCCTGCTGTTGACCCCTTTACCAAAAGGAAAGAACCCAGGGCTTCGGATGTGAATATAGTGTCACTCCCTCACTCCACAAACCCTAGCCCTCTTCTGTTCTGCCTTCCTCTCTCTCCGAAGATGGCTTCACGCAGACTCGTTTCGTCTCTGCTTCGATCTTCTCTCCGCAGATCTCAATCCAAACCTTCAATTGCCGCATCTGCGTCCAGAATCTCTTCCACCAACCGCGCTTCGCCGCACGGATTCTTGCTCAACCGCATCGCGGAGTACGCCACCGCGTCTGCCGCTGCTGCCGCTCCTCCTTCTGCGCCTCCGCAGAAGAAGGAAGTTGGCGGTGGTGGGAAGATCACCGATGAGTTCACTGGGAAGGGCGCGATCGGACAGGTTTGCCAGGTAATTGGTGCCGTCGTTGATGTCAGATTTGACGAGGGTTTGCCTCCGATCCTGACTGCCCTCGAGGTTCTGGATCACTCCTCCAGACTGGTGTTGGAAGTCGCTCAGCATTTGGGTGAGGGCGTTGTCCGAACCATTGCTATGGATGCCACTGAAGGAGTCGTTAGAGGGTGGCGCGTCCTCAACACCGGCTCCCCCATCACTGTTCCTGTTGGTAGGGCTACCCTTGGCCGTATCATTAATGTCATTGGCGAGGCTATTGACCAGAAGGGTGACCTCACAACCGAGCATTATTTGCCTATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAATCAACTGAGCAGCAGATTCTTGCTACTGGGATCAAGGTTGTTGACCTGCTTGCACCTTATCAAAGAGGAGGAAAGATTGGGCTGTTTGGTGGGGCTGGTGTAGGAAAAACTGTCCTTATTATGGAACTTATTAACAATGTTGCAAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGTGAGGGTAATGACTTGTATAGAGAAATGGTTGAGAGTGGTGTTATCAAGCTTGGTGAGAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCTCGTGTTGGTCTTACTGGGCTTACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTTATAGACAACATTTTCCGTTTTACCCAAGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGAATCCCATCTGCTGTCGGTTACCAACCAACCTTGGCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACAACCAAAAAGGGTTCAATCACCTCTGTCCAAGCTATCTATGTGCCAGCTGATGACTTGACAGATCCTGCTCCAGCAACAACCTTTGCTCATCTTGATGCTACAACTGTGTTGTCACGACAGATCTCCGAGCTTGGTATCTATCCTGCTGTTGACCCCTTGGATTCTACATCTCGTATGCTGTCACCCCTTATTTTGGGTACGGAACACTATGAAACTGCTCGTGGTGTACAGAAGGTTCTTCAGAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGACGAGCTTAGTGAAGATGATAAATTGACTGTTGCCCGTGCTCGCAAGATTCAGCGATTCTTAAGCCAGCCTTTCCATGTTGCTGAAGTCTTCACTGGTGCTCCAGGAAAATATGTTGAATTGAAGGAGAACATTAGCAGCTTCCAGGGTGTGTTGGATGGCAAGTACGATGACCTCCCAGAGCAATCCTTTTACATGGTTGGTGGCATTGAAGAGGTCATTGCCAAGGCCGAGAAAATTGCTAAGGAGTCTGCCGCATCTTAA 3066 0.4987 MASRRLVSSLLRSSIRRSQSKPSIAASASRISSTNRASPHGFLLNRIAEYATASAAAAAPPSAPPQKKEVGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEAIDQKGDLTTEHYLPIHREAPAFVEQSTEQQILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMVESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPFTKRKEPRASDVNIVSLPHSTNPSPLLFCLPLSPKMASRRLVSSLLRSSLRRSQSKPSIAASASRISSTNRASPHGFLLNRIAEYATASAAAAAPPSAPPQKKEVGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEAIDQKGDLTTEHYLPIHREAPAFVEQSTEQQILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMVESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGTEHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENISSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAAS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5904g00001 1021 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 675 896 IPR000194 GO:0005524
Vium5904g00001 1021 CDD ATP-synt_F1_beta_N 548 621 - -
Vium5904g00001 1021 Hamap ATP synthase subunit beta [atpB]. 547 1014 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vium5904g00001 1021 SMART AAA_5 687 959 IPR003593 GO:0016887
Vium5904g00001 1021 SMART AAA_5 224 418 IPR003593 GO:0016887
Vium5904g00001 1021 FunFam ATP synthase subunit beta 464 513 - -
Vium5904g00001 1021 Gene3D - 538 620 - -
Vium5904g00001 1021 Gene3D - 75 157 - -
Vium5904g00001 1021 PANTHER ATP SYNTHASE 531 1017 - -
Vium5904g00001 1021 FunFam ATP synthase subunit beta 621 898 - -
Vium5904g00001 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 902 IPR027417 -
Vium5904g00001 1021 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 212 428 IPR000194 GO:0005524
Vium5904g00001 1021 Pfam ATP synthase F1 beta subunit 464 509 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vium5904g00001 1021 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vium5904g00001 1021 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
Vium5904g00001 1021 Gene3D ATP synthase, F1 beta subunit 464 513 IPR042079 -
Vium5904g00001 1021 CDD ATP-synt_F1_beta_C 903 1010 - -
Vium5904g00001 1021 Gene3D - 899 1021 IPR024034 -
Vium5904g00001 1021 Pfam ATP synthase alpha/beta family, beta-barrel domain 552 618 IPR004100 GO:0046034|GO:1902600
Vium5904g00001 1021 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Vium5904g00001 1021 CDD ATP-synt_F1_beta_N 85 158 - -
Vium5904g00001 1021 CDD F1-ATPase_beta_CD 159 428 - -
Vium5904g00001 1021 ProSitePatterns ATP synthase alpha and beta subunits signature. 887 896 IPR020003 GO:0005524
Vium5904g00001 1021 FunFam ATP synthase subunit beta 538 620 - -
Vium5904g00001 1021 FunFam ATP synthase subunit beta 158 434 - -
Vium5904g00001 1021 FunFam ATP synthase subunit beta 899 1018 - -
Vium5904g00001 1021 CDD F1-ATPase_beta_CD 622 901 - -
Vium5904g00001 1021 FunFam ATP synthase subunit beta 75 157 - -
Vium5904g00001 1021 FunFam ATP synthase subunit beta 1 50 - -
Vium5904g00001 1021 Gene3D - 621 898 IPR027417 -
Vium5904g00001 1021 Gene3D - 158 430 IPR027417 -
Vium5904g00001 1021 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 546 620 IPR036121 GO:0046034|GO:1902600
Vium5904g00001 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 429 IPR027417 -
Vium5904g00001 1021 NCBIfam F0F1 ATP synthase subunit beta 549 1013 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vium5904g00001 1021 NCBIfam F0F1 ATP synthase subunit beta 86 432 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vium5904g00001 1021 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 157 IPR036121 GO:0046034|GO:1902600
Vium5904g00001 1021 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 899 1015 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5904g00001 Vium-Chr5904 261 7524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5904g00001 585 957 Primary Pumps ATPases(2) AT1G20260 27.960 4.98e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5904g00001 K02133 - gmx:100789705 960.674