Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium589g00001 ATGTTGAGAGAGATATGTATAGCTACGAAAATGGAGTTGCAGAGTGATGAAGTTAATGCAGTGGAGAATAAGAGAAGAGTGTGTCTGGTTTGGGAAGATTTGACAGTGGTGGCTTCAAATGGTAGCAGTAGTGCAGAAAAGGAACTGCTAAAAGGTTTAAATGGTTATGCAGAACCCAACAGGATTATGGCACTCATTGGTCCTTCAGGATCTGGGAAATCAACTTTGCTTGCTGCACTTGCTGGGATACTTCCCAACAATGTTAGGATGACCGGAAATGTGGTACTGAATGGGAGTACGAGAAGGACGACAGGCTGCAAAGACGTTTGTTATGTTACTCAAGAAGACTATTTCTTGGGAACTCTAACTGTGAAGGAAACTCTCACATATGCAGCTCGTTTGAGACTTCCTTCACATACGACCAGAAATGAGATTGAGAAGGTGGTAACAAATGTATTGACTGAAATGGGTCTAGAAGATAGTGCAGAAAGCAGACTTGGGAATTGGCATTTGAGAGGCATAAGTACAGGAGAGAAAAGAAGGCTTAGCATAGGCATTGAAATCTTAACTCAACCTCGTATAATGTTTCTGGATGAACCTACCAGTGGCTTGGATAGTGCAGCCTCTTTCTATGTCATTTCTTCTCTATCTAACATAGCACATGATGGAAGAATAGTCATATGCTCCATTCACCAGCCCAGTGGTGAAATCTTCAACCTTTTCGATGATCTGGTCCTCCTTGCAGCAGGTGAAGCTGTATACTTTGGACAAGCAACTATGGCTGTAAAGTTCTTTGCTGATGCAGGGTTTCCTTGTCCAACCCGAAAGAATCCTCCTGAGCATTTCCTTCGTTGTGTTAGCCCAGAGTTCGATAGTGTCACAGCCTTAATAAAGTCGAAAATTGAAAACGACGCTTCATCGTCGTGGAATTCTCTAATGAATATGACGACAGAGGAGATTAAATCGGAACTCGTAATGAACTACAAGAACTCCATACATTCAGAAAATGCAAGGAGAAAAATCAGAGAAATGAAAAAAATTTTGCAGGAAGAACCTTTAGTTGGGAAGATATATGATACCAGCTGGCTGAAGCAGCTATGCACACTGACAAATAGATTCTTCCTAAATATGACTAGAGACTTTGGTTACTATTGGCTAAGGATTGTATTGTATATCATCATATCAGTGAGTGCTGGTTGTCTTCTTTTCAACATAGGAACAAGTAATGAAGCAATCATATCTAGAGGCAAATGTGATGGATTCATCTTTGGCTTAATGATCTTTCTGTGTTTAGGAGGCGTACCCTTTTACCATGAGGAATTAAAGGTCTTCAAACGTGAAAGATTTGGAAAGCATTATGGAGAGGCCATCTTTGTACTCTCACATTTCCTCTCATCAGTGCCTTTTGTTCTTGCAATTTCCCTCTCTTCAGGGACAATACTTTACCATATGGTGAACTTTCATCCAGGCTTCTCTCATTACTGCTACTTTTGCATGAATATATTTTGCTTCATTTCTGTCACGGAGGGCTGCACATTACTCGTTGCAGCACTTTTACCCGACCTATTGGTAGCAATTGGAACTGCAACTGGTGTAATTGTATTCATGATGGTGCCATCTAATGTATTCAGAAGTCTAGCAGACATTCCAAAATTCTTCTGGCGCTATCCAATGTCCTATCTCAGCTACATTACCTGGTCAATACAGGGTCAATTCAAGAATGACCTGATTGGTCTTGAATTTGAACCACAGGTGACTGGGGATACCAAGATAAAGGGTGAACATATACTTCAAGTTATGTTTGGAATCAGGACTGATTATTCAAAATGGTGGGACTTAGGAGTTTTAGTTTGC 1854 0.4067 MLREICIATKMELQSDEVNAVENKRRVCLVWEDLTVVASNGSSSAEKELLKGLNGYAEPNRIMALIGPSGSGKSTLLAALAGILPNNVRMTGNVVLNGSTRRTTGCKDVCYVTQEDYFLGTLTVKETLTYAARLRLPSHTTRNEIEKVVTNVLTEMGLEDSAESRLGNWHLRGISTGEKRRLSIGIEILTQPRIMFLDEPTSGLDSAASFYVISSLSNIAHDGRIVICSIHQPSGEIFNLFDDLVLLAAGEAVYFGQATMAVKFFADAGFPCPTRKNPPEHFLRCVSPEFDSVTALIKSKIENDASSSWNSLMNMTTEEIKSELVMNYKNSIHSENARRKIREMKKILQEEPLVGKIYDTSWLKQLCTLTNRFFLNMTRDFGYYWLRIVLYIIISVSAGCLLFNIGTSNEAIISRGKCDGFIFGLMIFLCLGGVPFYHEELKVFKRERFGKHYGEAIFVLSHFLSSVPFVLAISLSSGTILYHMVNFHPGFSHYCYFCMNIFCFISVTEGCTLLVAALLPDLLVAIGTATGVIVFMMVPSNVFRSLADIPKFFWRYPMSYLSYITWSIQGQFKNDLIGLEFEPQVTGDTKIKGEHILQVMFGIRTDYSKWWDLGVLVC 618
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium589g00001 618 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 617 - -
Vium589g00001 618 Pfam ABC-2 type transporter 365 570 IPR013525 GO:0016020|GO:0140359
Vium589g00001 618 Gene3D - 19 267 IPR027417 -
Vium589g00001 618 SMART AAA_5 59 259 IPR003593 GO:0016887
Vium589g00001 618 CDD ABCG_EPDR 26 256 - -
Vium589g00001 618 Pfam ABC transporter 50 202 IPR003439 GO:0005524
Vium589g00001 618 Pfam ABC-2 type transporter 231 331 IPR043926 GO:0140359
Vium589g00001 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 274 IPR003439 GO:0005524
Vium589g00001 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 259 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium589g00001 Vium-Chr589 1461 14628 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium589g00001 43 243 Calmodulin-binding Proteins AT2G36910 26.389 1.62e-09 59.3