Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5896g00002 ATGAGTGTTACAAAATTAAATGAAGAGAAATTTGACATCATATCATACTCTCTACCAACACCAAAACTTGGATCCACCTTCTCAAATGTTATCAAAAGTTTTCCAAGCAGAAAATCAATTATTACAGAGGTTTTGGAGACATTGAAAGATGAAGATTTTAAAATCTTAAGTATATGTGGAATGGGTGGTGTGGGAAAGACAACACTTGTGAAAGAAGTAATTAAAATTTTAGAAGTATGCAAGCTATTTGATGAAGTTGTAATGGTAGTGGTTTCTCAAAATCTTGATTATGTGAAAATTCAAGGTCAAATTGCGGATGCTTTAGGCTTAAGATTTGAAAAGGAGACTATTCAAGGGAAAGCATGTCAACTACATGAAAGATTGAAAGGTGTTGATAATATTTTAATAGTTCTTGATGATGTTTGGGTATACTTTGATTTTGAGTCTATTGGAATTCCTTCCAATGAACATCATAAGAATTGTAAAATTTTGTTTACATCAAGAAATGAAGATGTTTGTTATAAGATGGGAAGTCAAAAGAATTTCACGGTTTCTATTTTGTCTCCAAATGAAAGTTGGGACCTTTTTCATGATATAGTTTGTAGAAATCTTTCAACCAAGCTTGATATTCTTCACATAGCAAAAGAGGTTTCAAATGAATGTGGGGGGTTGCCAATTGCCATTGTTACAATGGCAAAAGCATTAGCAAATAAAGAAAAACATGTATGGGAAGATGCATTAGATCAATTAAAAAGATCTTCCATCCCTTTCCTTTTAGAAATGCAAGCTTGTGTATATTCAAGCATCAAGCTAAGTTACAATTTTTTAGATAGTGCAGAAGAAAAATATGTTCTTTTCCTTTGTTGCTTATTTCCAGAAGATTTTGACATTCCTATAGAGGTTCTACTCTGGCATGGAATGGGTTTGCAATTGTTTATTAATATTAATGCATTGTGGAAAGTTAGAAATAGAGTGCACACCATTGTTGATAAACTTAAGAGGCGTTTCATGTTGTTAGATGGTAATGTGGAAGAGTGTGTCAAAATGCATGATGTTATACGCGATGTTATCATATCAGTTGTATCTACAGAAGAATATGATTTTATGATACAATGTGACGGATATCAAATGGAACAATCTAAAAGAGAAACATGTTATCATAGCAGTGCGATTTCACTTATCTCCAAAGAAGCAAAAGAACATCCTAAAGTGTTAAATTGTCCAAAGCTTAAGCTTTTGCAAATAGCATCAAAGAAGAAGGGTTTGGTTCCTGATAATTTCTTCCAATGTTTGAATAAGCTTATGGTGCTTAGTCTACAAAATGTGCACATTCATTCAACGGCTTTAGTATTTGAAGCTTTAGACAACATCCACACTCTACTACTAGAAGATTGTCTTGTAAGTGACATATCTATAATTGGTAAGAAACTCAAAATGCTTGAGATTCTTAGTTTTTCTAACTCAAATATCAAAGAATTGCCAGAAGAAATTGGACAACTAAGTTCACTAAGGTTATTAGATTTGACTGAATGCAATGATCTCATTCAAATATCTACTAATGTCTTTGCAAGCTTATCTAAACTATAA 1587 0.3214 MSVTKLNEEKFDIISYSLPTPKLGSTFSNVIKSFPSRKSIITEVLETLKDEDFKILSICGMGGVGKTTLVKEVIKILEVCKLFDEVVMVVVSQNLDYVKIQGQIADALGLRFEKETIQGKACQLHERLKGVDNILIVLDDVWVYFDFESIGIPSNEHHKNCKILFTSRNEDVCYKMGSQKNFTVSILSPNESWDLFHDIVCRNLSTKLDILHIAKEVSNECGGLPIAIVTMAKALANKEKHVWEDALDQLKRSSIPFLLEMQACVYSSIKLSYNFLDSAEEKYVLFLCCLFPEDFDIPIEVLLWHGMGLQLFININALWKVRNRVHTIVDKLKRRFMLLDGNVEECVKMHDVIRDVIISVVSTEEYDFMIQCDGYQMEQSKRETCYHSSAISLISKEAKEHPKVLNCPKLKLLQIASKKKGLVPDNFFQCLNKLMVLSLQNVHIHSTALVFEALDNIHTLLLEDCLVSDISIIGKKLKMLEILSFSNSNIKELPEEIGQLSSLRLLDLTECNDLIQISTNVFASLSKL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5896g00002 528 PRINTS Disease resistance protein signature 128 142 - -
Vium5896g00002 528 PRINTS Disease resistance protein signature 498 514 - -
Vium5896g00002 528 PRINTS Disease resistance protein signature 55 70 - -
Vium5896g00002 528 PRINTS Disease resistance protein signature 221 235 - -
Vium5896g00002 528 Pfam NB-ARC domain 40 274 IPR002182 GO:0043531
Vium5896g00002 528 Gene3D - 187 271 IPR042197 -
Vium5896g00002 528 Gene3D - 23 185 IPR027417 -
Vium5896g00002 528 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 4 526 - -
Vium5896g00002 528 Gene3D Ribonuclease Inhibitor 379 528 IPR032675 -
Vium5896g00002 528 SUPERFAMILY L domain-like 348 528 - -
Vium5896g00002 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 285 IPR027417 -
Vium5896g00002 528 FunFam Probable disease resistance protein At1g61300 26 181 - -
Vium5896g00002 528 Gene3D - 272 359 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5896g00002 Vium-Chr5896 9062 10959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5896g00002 52 364 WRKY Transcription Factor Family AT5G45050 25.234 2.83e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5896g00002 - - vum:124841935 1038.87