Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5891g00002 ATGGCAATGTTTCAGCCTACTTGTAAGAGGGATGGGATCAAGGGTCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGCGGCGTGGATTCTGGGGTTGTGGGGACTGGGGTTGGTGAAAAACTGGATCTTGGGAGAATGATTGAAGAGTTAGACTTGTCTGAAGTTCCCTATGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCAGGACCCTGTGACTCTTTGCACGGGTCAGACCTACGAGAGGTCCAACATTCTCAAATGGTTCAGTCTGGGACACTTCACTTGCCCCACCACAATGCAAGAGCTCTGGGACGATTCCATCACACCAAACACCACTCTCTACCGTTTGATATCCACCTGGTTTTCTCAGAAGTACCTTGTGATGAAGAAGAGATCAGAAGACGTCCATGGGAGGGTGTCGGAGCTTGTTGAGACTCTCAAGAAGGTGAAGGGGCAAGCTCGTGTTCTTGCCCTCAAGGAGCTCCATCAAGTGGTGGCTGCTCATGCCACTGCCCGCAAGGCATTGGTCGATGGCGATGGAGTGTCCGTGGTGTCGGCGTTGCTCGGTCCTTTTACATCCCATGCGGTTGGCTCCGAGGTCATTGGTGTGCTCGTGAGTTTGAACCTTGATTGTGAGTCCAAGAGGAATCTATTGCAGCCTGCAAGGGTTTCCCTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACGAAAATCAATTGCACGCGGCTGATTGAGACATTGATTGAAGGGAAGGATTTCAAGTTGGAGATTTTCAGGAGCCATAGTCTTTTGGTTGGATTGATGAGGCTCGTTAAAGACAAGAGGCATTCAAATGGAATCTGCCCTGGATTGAGGCTCCTCAGAACAGTGTGTTTGCATTCAGAAGTTAAGAGTTTACTGGTAAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCCCGAATGTTTGGAATTGGCTCTTTCTATCTTGGATGCACTGGCTTCTGTTCCCGAAGGAAGATTAGCTTTGAAGAACTGTTCTAATACGATACACGTTATGGTGAAACTGTTGATGCGGGTCTCAGAAAACTGTACTCAATATGCGTTATCAATACTGTGGTCTGTGTGCAAGCTGGCACCTGAGGAGTGCTCTTTGATCGCTGTGGAAGCAGGACTTGCTGCAAAGCTTCTCCTTGTGATCCAAAGCGGTTGCAATCCTATATTGAAACAACAGTCGGCTGAGCTTTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATTTCCAAGTGCAAACTTACTAGAACCATTCAATGA 1332 0.473 MAMFQPTCKRDGIKGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGRMIEELDLSEVPYVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLISTWFSQKYLVMKKRSEDVHGRVSELVETLKKVKGQARVLALKELHQVVAAHATARKALVDGDGVSVVSALLGPFTSHAVGSEVIGVLVSLNLDCESKRNLLQPARVSLMVDILNEGSIETKINCTRLIETLIEGKDFKLEIFRSHSLLVGLMRLVKDKRHSNGICPGLRLLRTVCLHSEVKSLLVSIGAVSQLVELLSGLEPECLELALSILDALASVPEGRLALKNCSNTIHVMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5891g00002 443 PANTHER WDSAM1 PROTEIN 55 429 IPR045185 GO:0061630
Vium5891g00002 443 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Vium5891g00002 443 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Vium5891g00002 443 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Vium5891g00002 443 CDD RING-Ubox_PUB 60 110 IPR045210 -
Vium5891g00002 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 135 IPR013083 -
Vium5891g00002 443 SUPERFAMILY RING/U-box 53 129 - -
Vium5891g00002 443 Gene3D - 136 438 IPR011989 -
Vium5891g00002 443 SUPERFAMILY ARM repeat 145 429 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5891g00002 Vium-Chr5891 24243 26849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5891g00002 1 443 U-box Gene Family AT3G49810 70.889 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5891g00002 - - gmx:100781741 754.207