Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5891g00001 ATGTCGCTCGAGTCCACAAGCCACCAAACTCCTGACTTGTATTGCAGTGAAGTAACTAGCGAAGTGATTCACTTGGAGGATTCTGATGAGGCTTTGAAGTTGAATTATGTTCTGTGGGGAGACTCCAACAGTGATGAAAGTTGTCTATTGAGCTTATTAGAATCTGAAAATGACCAAGTACAGGAACAAACAAAGTCCACAGGACAGCTTCCCAAAACATGGCTGGTTAATGCTCGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCTGAGACAGCTTATCTTTCTGTAAATTACCTCGATCGTTTCCTCTTGTCACGCACCTTGACGCATGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTTCACTAGCAGCTAAAATGGAAGAAACCAAAGTGCCACTTCTTTTGGACCTACAAGTGATCGAGTCTAGGTTCCTCTTTAAGCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTCAAGTGGCGATTGCGCCCTATAACCCCTTTTGATTTTGTCCATCTTTTCATTGCCAAGCTTTCATGGTCTGCTTCCACATGGGGTGATTTAAGTTTCACTGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCTGCCCTTTTATGGGCAAACAATCAATGTGTAGAAGACACGAAATCAGATTGTTTCCACGAGAATATAAACTTTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACAGATAATTCTCCGATCAGAATTTTATTGGCCAAGGAGTCTGCAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATGGTGCAGCTATGCAAGAAACATTGCTTTCTGATTGCAGCTGCCATGCATACAAGCCCTGA 954 0.4256 MSLESTSHQTPDLYCSEVTSEVIHLEDSDEALKLNYVLWGDSNSDESCLLSLLESENDQVQEQTKSTGQLPKTWLVNAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLLSRTLTHDKAWPLQLLSVACLSLAAKMEETKVPLLLDLQVIESRFLFKPKTVQRMELLVMASLKWRLRPITPFDFVHLFIAKLSWSASTWGDLSFTVSRVSDVIIRTCLVMDFLVFSPSTIAAAALLWANNQCVEDTKSDCFHENINFEMVQKCYKLMKQKQIILRSEFYWPRSLQLLPRSPTCVLDGAAMQETLLSDCSCHAYKP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5891g00001 317 Gene3D - 62 179 - -
Vium5891g00001 317 Gene3D - 52 266 - -
Vium5891g00001 317 SMART cyclin_7 84 172 IPR013763 -
Vium5891g00001 317 SMART cyclin_7 185 271 IPR013763 -
Vium5891g00001 317 Pfam Cyclin, N-terminal domain 53 178 IPR006671 -
Vium5891g00001 317 SMART Cyclin_C_2 181 306 IPR004367 -
Vium5891g00001 317 FunFam D6-type cyclin 176 267 - -
Vium5891g00001 317 CDD CYCLIN_AtCycD-like_rpt2 181 269 - -
Vium5891g00001 317 SUPERFAMILY Cyclin-like 163 278 IPR036915 -
Vium5891g00001 317 CDD CYCLIN_AtCycD-like_rpt1 78 176 - -
Vium5891g00001 317 PANTHER CYCLINS 52 271 IPR039361 -
Vium5891g00001 317 Pfam Cyclin, C-terminal domain 181 271 IPR004367 -
Vium5891g00001 317 FunFam D6-type cyclin 64 175 - -
Vium5891g00001 317 SUPERFAMILY Cyclin-like 47 178 IPR036915 -
Vium5891g00001 317 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5891g00001 Vium-Chr5891 3250 5021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5891g00001 76 274 Core Cell Cycle Gene Families AT1G70210 46.602 1.12e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5891g00001 K18810 - gmx:100799323 474.167