Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5886g00018 ATGCCTTCTTCTGCTTCTGCACCTACCTTGCTCTCCAAATGCACTGTCTTCCCAGACCAACCCTCAACTCTGGGAAACCTCAAACTCTCCGTTTCGGACCTTCCCATGTTGTCCTGCCACTATATCCAAAAGGGTTGTCTCTTTACCCAACCCAGTATTCCACTCCACACTCTAATTCCTCTTCTTAAATCCGCACTCTCTCGCACACTTTCTCTCTTTCCACCTCTAGCTGGCCGTTTAACCACCGATTCCCACGGTTACGTTTACATCGCTTGCAACGACGCCGGCGTCGATTTCATACACGCCAATGCCGCCGCCCTCCGCGTCTGCGACCTACTGTCCCCACTCGACGTCCACGAATGCTTCAAGGAATTTTTCACCTTCGACAGAAAAGTCAGCTACACCGGCCATTACTCCCCGATTCTCGCCGTTCAGGTCACCGAACTCGCTGACGGCCTCTTCATCGGCTGCGCCGTCAATCACGCCGTCACCGACGGCACCTCCTTCTGGAACTTCTTCAACACCTTCGCCCATCTCTGCAGAGCATCGAGTAAAAGCTTCCGCAATATACCGGACTTCCACCGCGACTCAGCTCTGATCTCTGACGCCGTCCTCCGCCTACCCGAGGGCGGTCCTCAGGTCACGTTCGATTCTCACGCGCCGCTGCGCGAGAGAATCTTCAGCTTCAGCCGCGAAGCGATTCAGAAGCTGAAGGCAATGACGAACAACCGCCGATGGCCGGAGAACAACGGCACGGCCGTCGAGTTGATGCGGAAGCAAAGCAACGATCAGTTTCATCACGCGAAGGAGAACAACGGCAAGGCCGGCACAATTCTGGAGAACTGGTTCAAGGTGAATTCGAATTCGAAACCGCAAACGGTTACCGAAACAGTGGAGATTTCGTCGTTTCAATCAGTGTGCGCGTTGCTGTGGCGCGCGGTTACGCGCGCTAGGAAATTGCCTGCTTCCAAAACTACGACGTTCAGAATGGCAGTTAACTGTCGTCATCGAATGGAACCAAAATTGGAACCGTACTACTTCGGGAACGCGATTCAGAGCGTTCCAACGTATGCTTCTGCCGCTGACGTGTTATCGAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACGCAAACGTGAAGGCGCACGACGACGCCATGGTGCGACGCTTCATAGACGATTGGGAGCAGAAACCCAGGTGCTTTCCTCTCGGGAACCCTGACGGTGCATCCATCACTATGGGTAGTTCTCCGAGGTTTCCAATGTACGATAACAACTTCGGGTGGGGGAGACCTCTGGCGGTGAGAAGTGGAAGAGCGAACAAATTCGACGGTAAGATCTCGGCGTTTCCCGGAAGAGACGGAACAGGGACCGTCGATTTGGAAGTGGTTTTAGCGCCCGAAACCATGGAAGCGCTGGAATCTGATCCAGAATTCACGAAATATGCAACGTGTCAGTTGTGA 1461 0.5414 MPSSASAPTLLSKCTVFPDQPSTLGNLKLSVSDLPMLSCHYIQKGCLFTQPSIPLHTLIPLLKSALSRTLSLFPPLAGRLTTDSHGYVYIACNDAGVDFIHANAAALRVCDLLSPLDVHECFKEFFTFDRKVSYTGHYSPILAVQVTELADGLFIGCAVNHAVTDGTSFWNFFNTFAHLCRASSKSFRNIPDFHRDSALISDAVLRLPEGGPQVTFDSHAPLRERIFSFSREAIQKLKAMTNNRRWPENNGTAVELMRKQSNDQFHHAKENNGKAGTILENWFKVNSNSKPQTVTETVEISSFQSVCALLWRAVTRARKLPASKTTTFRMAVNCRHRMEPKLEPYYFGNAIQSVPTYASAADVLSRDLRWCAEQLNANVKAHDDAMVRRFIDDWEQKPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLAPETMEALESDPEFTKYATCQL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5886g00018 486 SUPERFAMILY CoA-dependent acyltransferases 37 182 - -
Vium5886g00018 486 Gene3D - 9 206 IPR023213 -
Vium5886g00018 486 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 478 - -
Vium5886g00018 486 Gene3D - 221 477 IPR023213 -
Vium5886g00018 486 Pfam Transferase family 10 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5886g00018 Vium-Chr5886 150108 151932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5886g00018 61 473 Monolignol Biosynthesis Gene Families AT5G48930 27.187 4.70e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5886g00018 - - gmx:100500612 844.343