Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5886g00017 ATGGACGAGGGCATGTCAGGCTTTTGCATGAGATCAGGAAGTGTCCGTGGGAAAAGTGGAAGCACTGCTTCTTCTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACAACCGAACAGGTTAAACTTCTAACTGAACTCTTCAGGTCAGGGCTCCGAACCCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCCAGAGAAAGACAGAAGCGCCGCAAGGTCTCCTTTGACGACAAGGATGTCGTCATTCGTAGACAAAACTCCTTCAACACTTCCTCACAAAGTCTTGCTGATATGTATCGAGTTTCAGAGCCAGATAGAGTGATTGAGACGCTTCAACTCTTTCCCATAAACTCCTTCGGTGAATCTGAACCGGAGAACCTGAGGTTACACGGAAATGAATGTAGGGATAGTAGTACAATGTTTTCATGCACGATGGATGAAGAAATAGAGCACCCACCATTGGAACTGCGCTTGAGCTTTCTGTAA 555 0.4631 MDEGMSGFCMRSGSVRGKSGSTASSATGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVVIRRQNSFNTSSQSLADMYRVSEPDRVIETLQLFPINSFGESEPENLRLHGNECRDSSTMFSCTMDEEIEHPPLELRLSFL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5886g00017 184 SUPERFAMILY Homeodomain-like 32 94 IPR009057 -
Vium5886g00017 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 18 110 IPR044555 GO:0003700|GO:0099402
Vium5886g00017 184 Pfam Homeodomain 31 91 IPR001356 GO:0003677
Vium5886g00017 184 CDD homeodomain 33 93 IPR001356 GO:0003677
Vium5886g00017 184 FunFam WUSCHEL-related homeobox 11 30 98 - -
Vium5886g00017 184 MobiDBLite consensus disorder prediction 11 32 - -
Vium5886g00017 184 Gene3D - 30 98 - -
Vium5886g00017 184 ProSiteProfiles 'Homeobox' domain profile. 27 92 IPR001356 GO:0003677
Vium5886g00017 184 MobiDBLite consensus disorder prediction 15 32 - -
Vium5886g00017 184 SMART HOX_1 29 96 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5886g00017 Vium-Chr5886 138887 139887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5886g00017 8 184 Wox Gene Family AT3G11260 54.404 7.70e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium5886g00017 Homeodomain 6.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5886g00017 - - pvu:PHAVU_008G226100g 330.102