Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5886g00016 ATGGAGGGGAAGGAGCAGGATGTGTCGTTGGGAGCGAACAAGTTCCCAGAGAGACAACCGATTGGTACGGCGGCGCAGAGCCAAGACGACGGCAAGGACTACCAGGAGCCACCGCCAGCGCCGCTTTTCGAGCCCTCAGAGCTTACGTCATGGTCGTTCTACAGAGCAGGGATAGCAGAGTTTGTAGCAACTTTTCTGTTTCTCTACATCACCATCTTAACCGTCATGGGTGTCCTTAGGTCTCCCTCCAAGTGCCAATCCGTTGGTATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGAATCTCAGGGGGTCACATAAACCCTGCGGTTACCTTTGGGCTGTTCTTGGCAAGGAAATTGTCGTTGACCAGAGCGTTGTTCTACATAGTGATGCAAGTGTTGGGTGCCATCGCTGGCGCTGGAGTGGTGAAGGGTTTCGAGGGAAAAACCAGATACGGTGCGTTGAACGGTGGTGCCAACTTTGTTGCCAAAGGTTACACAAAAGGTGACGGACTCGGTGCTGAAATCGTTGGCACCTTTATCCTTGTTTACACCGTTTTCTCAGCCACCGATGCCAAACGTAGCGCCAGAGACTCTCACGTCCCCATTCTGGCACCTTTACCAATTGGGTTCGCCGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGTATCAACCCTGCTCGTAGTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGACGATCACTGGATCTTCTGGGTGGGACCATTCATCGGTGCGGCTCTCGCTGCCCTCTACCACCAGGTCGTAATCCGCGCCATTCCCTTCAAGTCGAAGTGA 870 0.5425 MEGKEQDVSLGANKFPERQPIGTAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVLRSPSKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQVLGAIAGAGVVKGFEGKTRYGALNGGANFVAKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5886g00016 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Vium5886g00016 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Vium5886g00016 289 MobiDBLite consensus disorder prediction 1 39 - -
Vium5886g00016 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Vium5886g00016 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium5886g00016 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Vium5886g00016 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5886g00016 Vium-Chr5886 121112 122659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5886g00016 1 289 Major Intrinsic Protein MIP AT4G23400 86.505 2.20e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5886g00016 K09872 - gmx:100791447 551.206