Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5886g00010 ATGGCCCCAAAACAAACAAAGGCAGAGAAGAAGATAGCTTACGATGGGAAGCTGTGCCAGCTTCTCGAAGAATACGGTCAAATCCTCGTGGTCAACGCCGACAACGTGGGGTCAAACCAGCTCCAGAACATTCGCAAGGGTCTCCGCGGAGACTCTGTCGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCCGTCAGAATGCACGCTGAGAAAACCGGCAACAACGTGTATCTCAGCCTCATCCCTCTCCTTGTCGGCAATGTGGGTTTGATTTTCACCAAGGGCGACTTGAAGGAGGTCAGTGAGGAGGTTGCAAAATACAAGGTTGGAGCACCTGCTCGTGTTGGTTTGGTTGCACCAATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGATCCATCTCAGACCTCTTTCTTCCAGGTCCTTAACATTCCGACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAGGAAGGGAGAAAAGGTTGGATCTTCCGAAGCTGCATTGCTTGCCAAGCTTGGCATTAGGCCTTTCTCTTATGGGCTTGTGGTCCTTTCTGTTTATGATAATGGCTCTGTGTTTAGCCCTGAGGTCCTTGATCTTACCGAGGATGACCTCATTGAGAAGTTTGTTGCTGGTGTTTCGATCGCTACTTCTCTTTCATTGGCTATCTCATTCCCAACCCTTGCAGCTGCACCACATATGTTTGTGAACGCCTACAAGAATGTTCTATCTGTTGCTGTTGAGATAGATTATTCTTTCCCTGAGGCAGACAAGGTCAAGGAGTATCTCAAGGACCCAAGCAAATTTGCAGTAGCTGCTGTTGCTGCTCCTGCTGCTGATTCTGGTGCTCCAGCTGCTGCAGCAAAGGAAGAGGAAAAGAAGGAAGAGCCAGCTGAAGAATCTGATGATGACATGGGTTTCAGTTTGTTTGACTAA 963 0.4839 MAPKQTKAEKKIAYDGKLCQLLEEYGQILVVNADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNVYLSLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFVAGVSIATSLSLAISFPTLAAAPHMFVNAYKNVLSVAVEIDYSFPEADKVKEYLKDPSKFAVAAVAAPAADSGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5886g00010 320 CDD Ribosomal_P0_L10e 9 185 - -
Vium5886g00010 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
Vium5886g00010 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vium5886g00010 320 Gene3D - 6 209 IPR043141 -
Vium5886g00010 320 MobiDBLite consensus disorder prediction 305 320 - -
Vium5886g00010 320 Gene3D - 114 185 IPR043164 -
Vium5886g00010 320 MobiDBLite consensus disorder prediction 287 320 - -
Vium5886g00010 320 Pfam 60s Acidic ribosomal protein 235 319 - -
Vium5886g00010 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Vium5886g00010 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Vium5886g00010 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 302 - -
Vium5886g00010 320 Pfam Ribosomal protein L10 8 108 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5886g00010 Vium-Chr5886 62754 65340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5886g00010 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.132 0.0 506