Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5886g00009 ATGGCTTCCTCTTACCGTGACCGCACCTCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGAAGGAGGGACCTCGCCTTCAGTTCAACCCGAGATTGCTTCTTCCACCTCTCACGATTCCTATTCAAGATCTGAATTCAACCGAAAGGCCTCACGAATCGGGTTGGGGATAAATGAAACCTCACAGAAGGTGGCGAGGCTCGCGCAGCTGGCGAGGAGGTCGTCCATGTTCAACGATCCGGCCGTGGAGATTCAGGAGCTGACTGTGCTGATTAAGAACGAGATCACGGCGCTCAATTCGGCTCTCTCCGATTTGCAAGCCATTCAGAACATGGACATGGCTGATGGAAGTTACTCGCAGGATAGGATTGTGCATTCAACCGCGGTTTGTGATGACTTGAAGAGCAAACTTATGGGAGCCACGAAGCATCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCACGAGAGCAGGAAGCAGATTTTTTCCAAGAATGCATCAAGGGAGAACCCTTTCCAGCATCAACCAAAGCCAGCTACTGAGCCGCCTCCTTGGTCAAATTCATCGAATGCATATGACAATCTGCAACAAGAATCGGTATTACCATCAAATGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCAGTGGACAACACTCCAACTCAGCAAATGGAAATGTCTATGGTGCAGCAGGTTGTTCCTCGGCAAGAAAACTACACTCAAAGTAGGTCAACTGCTCTGCACAATGTGGAGTCTACCATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCGAATGTTGAAGGAGCTCACAGCTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTGATAAAGATATTTGCCGTTCTGATACTTTTCCTCTTGATCTTCATATTCTTTGTGGCCTAA 1011 0.4748 MASSYRDRTSEFRLLSETLKKIEGGTSPSVQPEIASSTSHDSYSRSEFNRKASRIGLGINETSQKVARLAQLARRSSMFNDPAVEIQELTVLIKNEITALNSALSDLQAIQNMDMADGSYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHESRKQIFSKNASRENPFQHQPKPATEPPPWSNSSNAYDNLQQESVLPSNGAPVSNQLRRRLAVDNTPTQQMEMSMVQQVVPRQENYTQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAVLILFLLIFIFFVA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5886g00009 336 SMART tSNARE_6 239 306 IPR000727 -
Vium5886g00009 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Vium5886g00009 336 Gene3D - 41 299 - -
Vium5886g00009 336 PANTHER SYNTAXIN 46 331 IPR045242 -
Vium5886g00009 336 MobiDBLite consensus disorder prediction 160 196 - -
Vium5886g00009 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Vium5886g00009 336 CDD SNARE_syntaxin5 248 323 - -
Vium5886g00009 336 MobiDBLite consensus disorder prediction 23 43 - -
Vium5886g00009 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium5886g00009 336 MobiDBLite consensus disorder prediction 23 47 - -
Vium5886g00009 336 Pfam SNARE domain 281 332 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5886g00009 Vium-Chr5886 52609 61953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5886g00009 1 336 SNARE and Associated Proteins AT5G05760 66.864 1.30e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5886g00009 K08490 - gmx:100777383 540.036