Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5883g00006 ATGTTTTCCTTATTCTCTCTCCTTCACCAGGGGAGTTTCTACATCACAACTATGGCTTCTCTCACTCCTCTTCTTCCATTTCTTTTCCCTTTTCTGGCAACTTCTTTTGTCACAGTTTTTGCCTTTCAGGTCTCAATCAAACCTACAAATTTGTCTCCTTTAAGTTGCCCTGCTAAGATCCTAACATGTAATGCCTCCCTCTACCACATATCCTATAATCTCACCATTCAGCAAATTGCCTCTTTTTACTCGGTTACTTCTTCCCATATCACACCTATAAAACATGGCACCAAACAAGACTACCTCATCACAGTACCTTGTTCATGCAAACATACGAGTGACCTTAGCGGATATTTCTATGACACCACCTACAAAGTAAGGCCACATGACACTTTTGTGAATATTTCAAACCTCGTTTTCAGTGGCCAAGCTTGGCCAGTTAATGGTACATTGAATCCAGATGAAAATATAGCAATACACCTTCCATGTGGGTGCTCAGAAAGTGACTCTCAAATTGTTGTCACCTATACAGTTCAGCCAGATGATACACCAACAATGATTGTTAATCTGCTAAATGCTTCACTGGCTGACATAATGAGCATGAACAAGGTTCTGGCTCCGAACTTTAAATTCATAGACGCTGGTTGGGTTCTGTTTGTTCCCAAGGGATCCAAAGGGCTATTACATAAAAAGAAACTTAAGTGGACAACAACAATAATTGGTATCTTAGCGGGAGTGACATTACTTTCGGTTACTACAACCATCATTCTCATTGTCAGGGTAAATAAAGTGAATCAAATGATCAGTGAAGATTCACACCTTATCTCCAGAAGATCAATGGCCAATAGAACTATTTCCTCAAAGTATAACTTTCAAAAGGAATGTTTAGAAGATGTAATTTCATTAGAATCAGAAAGACCAATAGTATACAACCTTGAGGAGATTGAAGAGGCTACGAATAACTTCGATGAAAGTCGAAGAATAGGAAGTGGTGGATACGGAAGTGTTTATTTTGGAGTATTAGGGAACAAGGAAGTTGCTGTGAAGAAAATGAGGTCCAATAAATCTAAAGAGTTCTATGCAGAACTCAAGGTCTTATGTAAGATCCACCATATCAACATTGTGGAGCTGTTGGGATATGCAAACGGAGAAGATGACCTCTATTTGGTGTATGAGTACGTTCCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTAAAAGGGAACCAGCCTCTTTCTTGGAGTGTTAGGGTTCAAATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGACTATACAAAAGCACGATATGTGCACCGTGACATAAAGAGTAGCAATATTCTACTTAATGACAAGTTCAGAGCAAAGGTTGGAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCGGGCTACCTTCCACCAGAGTCTCTTAAGGAGCTTCAAGTGACCCCAAAAACCGATGTGTTTGCGTTTGGAGTGGTGCTTTCAGAGCTGTTAACAGGGAAACGAGCATTATTCCGAGAAAGCCAAGACGAGATTAAAATGAAATCACTCATTAGTGTTGTTAATAAAATATTCCAAGATGATGAACCAGAGATTGCCTTAGAAGATGCCATAGATAAGAATCTGGAAGCAAGCTATCGGATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAGTGGTGCTTGCAAGAAGATCCAATAGAGAGGCCCGAAATGAGGGATATAATTGGAGCACTCTCTCAGATTGTGATATCCTCAATAGAGTGGGAAGCATCCCTATGTGGAAATAGCCAGGTCTTCAGCGGGCTGTACAGTGGAAGATGA 1881 0.4009 MFSLFSLLHQGSFYITTMASLTPLLPFLFPFLATSFVTVFAFQVSIKPTNLSPLSCPAKILTCNASLYHISYNLTIQQIASFYSVTSSHITPIKHGTKQDYLITVPCSCKHTSDLSGYFYDTTYKVRPHDTFVNISNLVFSGQAWPVNGTLNPDENIAIHLPCGCSESDSQIVVTYTVQPDDTPTMIVNLLNASLADIMSMNKVLAPNFKFIDAGWVLFVPKGSKGLLHKKKLKWTTTIIGILAGVTLLSVTTTIILIVRVNKVNQMISEDSHLISRRSMANRTISSKYNFQKECLEDVISLESERPIVYNLEEIEEATNNFDESRRIGSGGYGSVYFGVLGNKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYANGEDDLYLVYEYVPNGSLSDHLHNPLLKGNQPLSWSVRVQIALDAAKGLEYIHDYTKARYVHRDIKSSNILLNDKFRAKVGDFGLAKLVERTNDEEFIATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLSELLTGKRALFRESQDEIKMKSLISVVNKIFQDDEPEIALEDAIDKNLEASYRMEDVYKMAEIAEWCLQEDPIERPEMRDIIGALSQIVISSIEWEASLCGNSQVFSGLYSGR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5883g00006 626 SMART serkin_6 322 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5883g00006 626 Gene3D Phosphorylase Kinase; domain 1 301 393 - -
Vium5883g00006 626 SUPERFAMILY Protein kinase-like (PK-like) 305 598 IPR011009 -
Vium5883g00006 626 ProSiteProfiles LysM domain profile. 174 220 IPR018392 -
Vium5883g00006 626 Pfam Protein kinase domain 323 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5883g00006 626 FunFam Kinase family protein 298 393 - -
Vium5883g00006 626 Pfam LysM domain 176 221 IPR018392 -
Vium5883g00006 626 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vium5883g00006 626 FunFam PTI1-like tyrosine-protein kinase 3 394 612 - -
Vium5883g00006 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Vium5883g00006 626 SUPERFAMILY LysM domain 174 221 IPR036779 -
Vium5883g00006 626 Gene3D Transferase(Phosphotransferase) domain 1 394 611 - -
Vium5883g00006 626 ProSiteProfiles Protein kinase domain profile. 322 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5883g00006 626 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 61 620 IPR044812 GO:0019199|GO:0045087
Vium5883g00006 626 CDD LysM 174 220 IPR018392 -
Vium5883g00006 626 Gene3D LysM domain 167 227 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5883g00006 Vium-Chr5883 123810 129443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5883g00006 302 626 Receptor kinase-like Gene Family AT1G51940 52.568 2.92e-115 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium5883g00006 Pkinase 3.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5883g00006 - - gmx:100791718 986.097