Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5877g00002 ATGGCCAAAACGGAGATGTCTAGAACTGAACTCAATGTAAATCAAGGAGAACCAACACGAGTTCAGCCTGCAAAGGAAACAGAAAAGGGACATTACTTCCTTTCAAATCTTGACCAGAACATTGCTGTTCCAGTGCGGACGGTGTACTGCTTCAAATCTGCTTTCAGAGGAAACGAGGATGCTGCACAAATTATCAAGGATTCCTTGTCGAAGATTCTTGTCCCTTATTACCCGATGGCAGGCACGCTGTCTATAAGCTCGGAAGGGAAGTTGATAGTGCATAATCCTGGGGAGGGTGCATTGTTTGTGGAGGCTGAAGCAAATTGTGACATCGAAGAGATAGGAGACTTGACGAAACCAGATCCTCATACTCTTGGGAAACTGGTTTACAATGTTCCTGGTGCTCGAAACATTCTTGAGATGCCTCTTATGACTGTTCAGGTGACAAAGTTCAGATGCGGAGGTTTTACTTTGGGGCTTTGCATGAACCACTGCATGAAAGATGGACTATGTGCCATGGAGTTTGTGAATGCATGGAGTGAGACAGCTCGAGGTTTAGACTTAAAGATCCCACCATTTCTTGATCGAACTATAATCAAAGCACGTGATCCTCCCAAAGTAGAGTTCAAACACAACGAATTTGCCGAAATACAGGATGTGTCAAACACTAGAAAGCTTTATGAGGAAGAAAACATGCTCTACAGATCCTTCTTCTTCGATCCTGAGAAGCTCGATCTACTTAAGAAAAAGGTCACAGAAGACGGAGTTTTGAGCAAGTGCTCAACTTTTGAAGCGCTCTCAGCGTTTGTGTGGAGAGCTCGAACTGCAGCATTAAGGATGCAACCTGAGCAACAAACAAAGCTTCTCTTTGCAGTTGATGGAAGGTCAAGATTCGTTCCCCCAATACCAAAGGGGTACTTTGGCAATGGTATTGTGTTGACAAATTCGTTGTGTGAGGCTGGGGAGTTATTGAGGAACCCTTTGTCATATTCCGTGGGATTGATTCGCAAGGCAATTGACATGGTCACTGATAGTTACATGAGATCTGCCATTGACTATTTTGAAGTCACAAGAGCTAGGCCATCTCTTACAGCCACCCTTTTGATCACAACTTGGACTAAGTTGTCTTTCCACACCACAGATTTTGGCTGGGGAGAACCTCTATGTTCTGGTCCTGTGACTCTGCCAGAGAAAGAAGTCATTTTGTTTTTATCACATGGTCAAGAAAGGAAAAACGTAAATGTTCTTCTGGGTTTGCCCAAGTCTGCCATGGAAATTTTTGAAGATTTGTTGATGCAAGTGTGA 1305 0.4368 MAKTEMSRTELNVNQGEPTRVQPAKETEKGHYFLSNLDQNIAVPVRTVYCFKSAFRGNEDAAQIIKDSLSKILVPYYPMAGTLSISSEGKLIVHNPGEGALFVEAEANCDIEEIGDLTKPDPHTLGKLVYNVPGARNILEMPLMTVQVTKFRCGGFTLGLCMNHCMKDGLCAMEFVNAWSETARGLDLKIPPFLDRTIIKARDPPKVEFKHNEFAEIQDVSNTRKLYEEENMLYRSFFFDPEKLDLLKKKVTEDGVLSKCSTFEALSAFVWRARTAALRMQPEQQTKLLFAVDGRSRFVPPIPKGYFGNGIVLTNSLCEAGELLRNPLSYSVGLIRKAIDMVTDSYMRSAIDYFEVTRARPSLTATLLITTWTKLSFHTTDFGWGEPLCSGPVTLPEKEVILFLSHGQERKNVNVLLGLPKSAMEIFEDLLMQV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5877g00002 434 MobiDBLite consensus disorder prediction 1 21 - -
Vium5877g00002 434 Pfam Transferase family 15 429 - -
Vium5877g00002 434 FunFam Spermidine hydroxycinnamoyl transferase 11 214 - -
Vium5877g00002 434 Gene3D - 7 215 IPR023213 -
Vium5877g00002 434 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 429 - -
Vium5877g00002 434 MobiDBLite consensus disorder prediction 1 25 - -
Vium5877g00002 434 Gene3D - 216 434 IPR023213 -
Vium5877g00002 434 FunFam Tryptamine hydroxycinnamoyl transferase 218 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5877g00002 Vium-Chr5877 39868 51602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5877g00002 11 434 Monolignol Biosynthesis Gene Families AT5G48930 36.136 6.73e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5877g00002 K15400 - gmx:100794490 774.622