Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5876g00001 ATGCGGGAGCACGTGGTTTTATCTGTTGTTGATCCTCTTCTTGCAGCATCTTCAACTTTGCAACCTGAGCACGGTGGCGATGACGGAGATTCACTCGTTGAGGGTGCTACTCATCTCAATGATGCTGGGGGATGTGATACTCTGGAAGAGCAAGAACAAGATCACGAAAAAGACCTTACCCTAATGGTGGAGTGTCGCATTTGCCAGGAAGATGACATTATTCAAAATTTGGACATACCCTGTGGATGCAATGGAACCTTGAAGTTTGCTCATAGGGAATGTGTTCAGCTATGGTGCTACGAGAAGGGTGATACAATTTGTGAAATCTGCCATCAGCCATTCAAACCTGACTATTCTGCGACATCAACTGTCTACCATCCTGGAGATACTTCAATTGATATCAGTGATGACTGGGAAAGCTCTAGTATTCCTTTAGATTTGCACAATTCTCGACTTTTGGCTATTGCAGCTGTAGAGCACCAAGTTCCAGAGATTCGTGAAGGTTATGCCAATGCTGCTGGCACCGATGGAATTACATTGTGGCACTCGGTTGGTCTAATTGTAAGCGTTTTTAATTTGTTCATGAAGATCAATAGTGTGTTTTTCAAATCTTTTATATTAGTCATGAGAATTGATATTATTAAATTTTTTCTTTCCTAA 660 0.4152 MREHVVLSVVDPLLAASSTLQPEHGGDDGDSLVEGATHLNDAGGCDTLEEQEQDHEKDLTLMVECRICQEDDIIQNLDIPCGCNGTLKFAHRECVQLWCYEKGDTICEICHQPFKPDYSATSTVYHPGDTSIDISDDWESSSIPLDLHNSRLLAIAAVEHQVPEIREGYANAAGTDGITLWHSVGLIVSVFNLFMKINSVFFKSFILVMRIDIIKFFLS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5876g00001 219 Pfam RING-variant domain 65 110 IPR011016 GO:0008270
Vium5876g00001 219 ProSiteProfiles Zinc finger RING-CH-type profile. 57 117 IPR011016 GO:0008270
Vium5876g00001 219 SMART ringv_2 64 111 IPR011016 GO:0008270
Vium5876g00001 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 116 IPR013083 -
Vium5876g00001 219 Pfam Protein of unknown function (DUF3675) 116 193 IPR022143 -
Vium5876g00001 219 SUPERFAMILY RING/U-box 63 115 - -
Vium5876g00001 219 CDD RING_CH-C4HC3_MARCH 65 111 - -
Vium5876g00001 219 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 200 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5876g00001 Vium-Chr5876 7276 12617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5876g00001 64 111 C3H Transcription Factor Family AT2G37950 39.216 9.94e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5876g00001 - - vra:106756822 295.434