Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5874g00012 ATGGTTATAGTGACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGAGGCCAAAGAGCTTGGATATGCCGGTGGCTGTTGGATTTGCTCTTGACATTGCCCGAGCAATGGAGTGTTTACACTCCCATGGGATCATTCATCGTGATCTTAAACCTGATAACTTGATCTTGACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAGGAATCCTTAACAGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCTGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGCTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTTAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAGGAAGATCCAAGTGATAGACCAAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCCACCATTTCATCACCAGAGCCTGTTCTTCATCTGCGGATGAGTTCATCTGATAATGTGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGACTCTGGAGAAACCTCAACAGACAAAGCTGAAGACAGGCCTAAAGGGTTTTTCTTCTGCTTCAACCAGTGTTACTGA 768 0.4323 MVIVTELLSGGTLRKYLLNMRPKSLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPSDRPNFSEIIQMLLRYLSTISSPEPVLHLRMSSSDNVVLPPESPGTSALMLGRDDSGETSTDKAEDRPKGFFFCFNQCY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5874g00012 255 PANTHER SERINE-THREONINE PROTEIN KINASE 2 195 - -
Vium5874g00012 255 Gene3D Transferase(Phosphotransferase) domain 1 1 197 - -
Vium5874g00012 255 MobiDBLite consensus disorder prediction 218 240 - -
Vium5874g00012 255 PRINTS Tyrosine kinase catalytic domain signature 5 18 IPR001245 GO:0004672|GO:0006468
Vium5874g00012 255 PRINTS Tyrosine kinase catalytic domain signature 160 182 IPR001245 GO:0004672|GO:0006468
Vium5874g00012 255 PRINTS Tyrosine kinase catalytic domain signature 117 139 IPR001245 GO:0004672|GO:0006468
Vium5874g00012 255 PRINTS Tyrosine kinase catalytic domain signature 43 61 IPR001245 GO:0004672|GO:0006468
Vium5874g00012 255 SUPERFAMILY Protein kinase-like (PK-like) 2 216 IPR011009 -
Vium5874g00012 255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Vium5874g00012 255 Pfam Protein tyrosine and serine/threonine kinase 2 189 IPR001245 GO:0004672|GO:0006468
Vium5874g00012 255 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5874g00012 255 FunFam serine/threonine-protein kinase HT1 10 210 - -
Vium5874g00012 255 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5874g00012 255 CDD STKc_MAP3K-like 3 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5874g00012 Vium-Chr5874 71586 74200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5874g00012 1 255 MAP Kinase Kinase Kinase AT5G50180 78.431 1.00e-151 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium5874g00012 PK_Tyr_Ser-Thr 7.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5874g00012 - - gmx:100792887 461.455