Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5874g00010 ATGAGTGAGAATGACAGGAGGTTCTACCGCCTCAGGGTGCCAAGGAGCGAGCTTAATGACATTGGAGGATCTGCAGGGAAAGTGAAAAATACTACTATGTCAGCTGCTGATCAAATGAAGAACTGTGAAACATATCGTGAATGTCCCAAATGTCATTATCATACTAATAACATTGATGTTTCTGATGAGTGGCCTGGTTTTCCTGTTGGTTTAAAGTTTGATCCTTCCGATGTTGAGCTTTTAAAGCATTTGGAAGCAAAGTGTTGTGTTGGAAAGAGAGAGCAACACGTGTTTATTCATAAGTTCATCCCAACTTTAGAAGGGGAGCAAGGGATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAGGAAAGATGGGAATAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGGAGAAGGAAGCGTAGGAAGATTCATCATCAAGATGGTTTGAGTGAGGAGCATGTTCGCTGGCACAAGACTGGTAGGACCAAATCTGTGATAGAAGATGGAGTTCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTAAGACCTAAGGAAGGGTCCAAGCCATATAAGACCAATTGGGTGATGCATCAGTACCATCTGGGGAGTGAAGAAGAGGAGAAGAATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAACAGAAGCATTCTGAGAAGAATGAGGAGAATACAGTAGTTGAAGATTCTAACATAGCAGCACAAACAGGTCCAAGTACCCCAAAACCAAATCCCCCTACTCGACCTTGCACAGGAAAATGTGATGACAATTTTGATGAAAATGAGCTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATTACTTGCGCCACCATCTGATGTTCTGGATGAGGATATTAAGGTTGACCCTGCATGGTTGGCTGATGAATCACAGGCTGATTGTGACTTTCATGGCTTGGAGGAAATCTTGTCAATGTCAGATTCATCTGCACTTTTTAATCATTCTGGATTGCCCTCCACTTTGAATAGCACTGTAAACAACATGGTTGCACCCGGAAACAATGATGATTATGCATCTTCTGGAGTTTCTGTGCTAGACACCCTGGAGATAGATCCTCCTTCAGATTTTGATCTTTGTAATTTGCAATTTGGCTCTCAAGACAGCACCCTTCACTGGATGGACAAGCTATAA 1206 0.4179 MSENDRRFYRLRVPRSELNDIGGSAGKVKNTTMSAADQMKNCETYRECPKCHYHTNNIDVSDEWPGFPVGLKFDPSDVELLKHLEAKCCVGKREQHVFIHKFIPTLEGEQGICYTHPENLPGARKDGNSVHFFHKTVNAYATGRRKRRKIHHQDGLSEEHVRWHKTGRTKSVIEDGVHKGFKKIMVLYVRPKEGSKPYKTNWVMHQYHLGSEEEEKNGEYVVSKIFYQQQKHSEKNEENTVVEDSNIAAQTGPSTPKPNPPTRPCTGKCDDNFDENELLSFIQDAKPIPGELLAPPSDVLDEDIKVDPAWLADESQADCDFHGLEEILSMSDSSALFNHSGLPSTLNSTVNNMVAPGNNDDYASSGVSVLDTLEIDPPSDFDLCNLQFGSQDSTLHWMDKL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5874g00010 401 FunFam NAC domain-containing protein 8 76 232 - -
Vium5874g00010 401 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 301 IPR044799 GO:0003700
Vium5874g00010 401 Pfam No apical meristem (NAM) protein 68 209 IPR003441 GO:0003677|GO:0006355
Vium5874g00010 401 SUPERFAMILY NAC domain 52 228 IPR036093 GO:0003677|GO:0006355
Vium5874g00010 401 Gene3D NAC domain 76 233 IPR036093 GO:0003677|GO:0006355
Vium5874g00010 401 ProSiteProfiles NAC domain profile. 67 228 IPR003441 GO:0003677|GO:0006355
Vium5874g00010 401 MobiDBLite consensus disorder prediction 247 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5874g00010 Vium-Chr5874 59225 65727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5874g00010 27 230 NAC Transcription Factor Family AT1G28470 49.554 9.53e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5874g00010 NAM 3.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5874g00010 - - vun:114182499 701.434