Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5874g00003 ATGGCTTTCTTATTGGTTGGCTATGCAGGAGCAGCAACAATTGCAGCACTCCTCTGCATGTTACGCTTGTTCTATCTCAGACGATGTTGCACGAACCCCATCTTCACTGAATACCCTTTTGTCGGCATGCTACCACACGTTCTTTGCAATTTGTGGCATGCCCATGATTATTCAACTCAGGTTTTGAAACAACACGGTGGAACTGGTGAGTTCGTTGGACCATGGTTTACCGGTATGAACTACATGCTCACCTGTGATCCCCTCAACGTGCACCATATGCTGAGCAAAAATTTCCGTAACTACGTCAAGGGACCCGAGTTTCGTGAGATTTTTCAGGCTTTCGGAGATGGCATTTTCACTGCTGATGCAGAAGCTTGGAGATACAGCAGAGATCTCTTCCATTCCTTGCTCAAACATAAAAGCTTCGAAGTGTTTCTGGAGAAAACTATTCAGAAGAAGGTGCAGAACAGCCTACTTCCTTTATTGAATCACGTGCAGCAACAAGGGAGGGTGGTGGATCTTCAAGATGTCTTCAATCGCTTCACTTTCGATAACATATGTTTTACAGTTCTCGGTCGTGACCCTGAATGCCTTTCCATTGATTTTCCAGAAGTTGCAATCGAGAAGGCTTTTAACGAAGCGGAAGAGTCCATATTCTACAGACACATAGTGCCAACGTTTGTTTGGAAGATGCAGCAATGGCTTCAGATTGGTCAAGAGAAGAAGATGACGGAAGCATGTAGAACACTTGATGAGTTCATATATTCATGCATAGCGTCCAAGAGAGAAGATCTAAGCAGGAACGAGGAAAATGAAACGGGAGAAAGTTTTCATGTTGACTTGTTAACAACTTTGATGAGAGAAGGAAAGGGAAAAGGAGAAGCACATGAGGATATATTTCTAAGAGATGCCGTGTTCAATCTTTTTGTGGCTGGGAGAGATACCATAACTTCAGCTCTTACGTGGTTCTTCTGGCTTGTTGCTACAAACCCTTTGGTGGAAGCCAAGATTGTTGAAGAGATGAATGAAAAGTTTGGAAGCAATGAAAAGACAGTTTTAAGGGCTGAGGAGGTGAAAAAGCTGGTTTATCTGCATGGTGCTATGTGTGAAACGTTGAGGCTGTTTCCTCCTATACCTTTCGAACGCAAGGAAGCAGTTGAAGCTGACGTGCTTCCTAGTGGGCATGGTGTTAATTCCAGAACAAAGATATTACTGTTTTTGTATGCAATGGGAAGAGTTGAAGAAATATGGGGAGAAGATTGCATGGAGTTGAAGCCAGAGAGATGGATCTCAGAGAAAGGAGGTATTGTTCATGTACCATCTTACAAATTCATTGCTTTCAATGCAGGACCTCGAAATTGCTTGGGGAAAGACTTGTCCTTTATCCAATTGAAGATTGTGGCAGCAGCTATTTTGCGCAGTTACCATGTTCAAGTTGTGGAGGGTTATGTTGCAACTCCTAGCCTCTCCATTGTTCTTCTTATGAAGGATGGTTTGAAGGTGAATATAACGAAAAGAAAGTTTTAG 1527 0.4283 MAFLLVGYAGAATIAALLCMLRLFYLRRCCTNPIFTEYPFVGMLPHVLCNLWHAHDYSTQVLKQHGGTGEFVGPWFTGMNYMLTCDPLNVHHMLSKNFRNYVKGPEFREIFQAFGDGIFTADAEAWRYSRDLFHSLLKHKSFEVFLEKTIQKKVQNSLLPLLNHVQQQGRVVDLQDVFNRFTFDNICFTVLGRDPECLSIDFPEVAIEKAFNEAEESIFYRHIVPTFVWKMQQWLQIGQEKKMTEACRTLDEFIYSCIASKREDLSRNEENETGESFHVDLLTTLMREGKGKGEAHEDIFLRDAVFNLFVAGRDTITSALTWFFWLVATNPLVEAKIVEEMNEKFGSNEKTVLRAEEVKKLVYLHGAMCETLRLFPPIPFERKEAVEADVLPSGHGVNSRTKILLFLYAMGRVEEIWGEDCMELKPERWISEKGGIVHVPSYKFIAFNAGPRNCLGKDLSFIQLKIVAAAILRSYHVQVVEGYVATPSLSIVLLMKDGLKVNITKRKF 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5874g00003 508 PANTHER CYTOCHROME P450 26 500 - -
Vium5874g00003 508 Gene3D Cytochrome P450 31 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Vium5874g00003 508 SUPERFAMILY Cytochrome P450 24 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 Pfam Cytochrome P450 39 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00003 508 CDD CYP86A 70 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5874g00003 Vium-Chr5874 9867 11553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5874g00003 35 506 Cytochrome P450 AT2G23180 46.570 5.81e-164 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5874g00003 - - gmx:100792360 799.66