Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5874g00001 ATGTTTTGCTATGCAGCAGTAATTGCAGCAGTCTTCTGCATCATCTATTTCTTCCATCGGAGACTATGTTGCAGATACCCTCTCTTCACCGACTACCCCATCACCGGAATGCTACCGGAGGTACTCTGCAATCTGTGGCGCATCCATGATTTTTCGGTTGAGAAGCTGAAATCACATGGGGGAACTGGTGAGTTCACTGGACCGTGGTTTACAAACATGAACTATATGGTCACCAGTGACCCCATCAACGTGCACCATATTTTGAGCAAGAATTTCAACAACTACGTCAAGGGACCCGAGTTTCGTGAGATCTTTCAGGCTTTCGGAGATGGGATATTCACTGCTGATGCAGAAGCATGGAAATATAACAGGGATCTCTTCCAATCCCTCTTTAAAAACAGAAGCTTCGAGGTGTTTCTGGAGAAAACCATTCGGAAGAAGGTGCAGAATAGTCTACTTGTCGTGTTGGATCATGTGCAACAACAAGGGAGCGTGGTGGATCTTCAAGATGTCTTCAATCGCTTCACCTTCGACAACATATGTTCCACAGTTCTTGGATACGACCCTCATTGCCTTTCTCTTGATTTTCCCGAAGTTGCAATCGAGAAGGCTTTTAATGAAATAGAGGAGTCCATTTTCTACAGACATGTAATGCCAAAGCGTCTTTGGAAGCTGCAGAGATGGCTTCAGATTGGTCGAGAGAAGACGATGACAGAAGCATGCAAATCGTTCGATGAGTTCATACATGCACTCATAGCGTCTAAGTTGGAAAAACTAAGCAAGTACAACGAAAATCAAACAGGAGAAGCCTGTGCTGATTTGCTGACAACTTTGATGAGAGAGGGGAAGGAAGAACACGATGCTGGCTTTCTAAGGGATGCTGTGTTCAATCTTTTTGTGGCTGGGAGAGATACCTTAACTTCAGCTCTCACCTGGTTCTTCTGGCTTGTTGCTACAAACCCTTTGGTGGAAGCCAAGATTCTTCAAGAGATGAATGAAAAGATTGGAAGAAATGAAAATACAGCATCGATTTTAACTATAGAGGAAGTGAAAAAACTGGTTTATCTGCATGGTGCTATATGTGAAACATTGAGACTCTTTCCTCCTATACCTTTCGAACGCAAACAAGCCCTTGAAGCTGACGTGCTTCCTAGTGGTCATGGTGTTAATCCAAGAACAATGATATTATTTTCACTGTATGCAATGGGAAGATTTGAGGAAATATGGGGAGAAGATTGCATGGAAATGAAGCCAGAGAGATGGATCTCACAGAAAGGAGGTATTGTTTATGTACCATCTTACAAGTTCGTTGCTTTTAATGCAGGACCTAGGACTTGCTTAGGTAAAGAGTTGTCTTTTCTTCAAATGAAGATTGTTGCAGCTGCTATTTTGCGCAATTATCATGTCGGAGTGGTGGAAGGTTCTGTTGTGACGCCAAATCTTTCGGTTGTTCTTCTGATGAAGAATGGTTTAAAGGTTAAGATAACAAAAAGAGAAACTTAA 1503 0.4245 MFCYAAVIAAVFCIIYFFHRRLCCRYPLFTDYPITGMLPEVLCNLWRIHDFSVEKLKSHGGTGEFTGPWFTNMNYMVTSDPINVHHILSKNFNNYVKGPEFREIFQAFGDGIFTADAEAWKYNRDLFQSLFKNRSFEVFLEKTIRKKVQNSLLVVLDHVQQQGSVVDLQDVFNRFTFDNICSTVLGYDPHCLSLDFPEVAIEKAFNEIEESIFYRHVMPKRLWKLQRWLQIGREKTMTEACKSFDEFIHALIASKLEKLSKYNENQTGEACADLLTTLMREGKEEHDAGFLRDAVFNLFVAGRDTLTSALTWFFWLVATNPLVEAKILQEMNEKIGRNENTASILTIEEVKKLVYLHGAICETLRLFPPIPFERKQALEADVLPSGHGVNPRTMILFSLYAMGRFEEIWGEDCMEMKPERWISQKGGIVYVPSYKFVAFNAGPRTCLGKELSFLQMKIVAAAILRNYHVGVVEGSVVTPNLSVVLLMKNGLKVKITKRET 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5874g00001 500 CDD CYP86A 64 491 - -
Vium5874g00001 500 Pfam Cytochrome P450 57 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 Gene3D Cytochrome P450 20 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 SUPERFAMILY Cytochrome P450 31 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5874g00001 500 PANTHER CYTOCHROME P450 20 493 - -
Vium5874g00001 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5874g00001 Vium-Chr5874 758 2377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5874g00001 10 498 Cytochrome P450 AT4G39490 46.771 1.51e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5874g00001 - - gmx:100792360 802.357