Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5870g00017 ATGTTGAGAGTGAAGGGAGGGAAAAGGCCACCTTGGGTGGGACTTGGAGCTGCCGTGTGGGTTCAGATTTGTTCAGGAAATGGCTACACTTTCCCTCTCTACTCTCATTCCTTGAAATCCGTTTTGGGTTTCAACCAGAGCCAGATTACTCTGCTTGGTGTTGCCAATGATATTGGTGAGAACCTTGGCATTCTTCCTGGTCTCGCCTGCAACAAGTTCCCCCCTTGGCTCATTCTTCTCATTGGTGGTCTCTTATCATTCCTTGGTTTTGGTGTTCTCTGGCTCGCTATTTCTAAAACATTTGACTGCGTTCCTTTCATTGTGCTATGGCTTGCACTTGCTGTAGCTACCAACAGCTGTGCATGGTTATCTACTGCTATTCTTGTCACCAACATGAGAAATTTCCCTGTCAGTAGAGGCACAGTTGCAGGAGTCCTGAAAGGTTATTCGGGGCTCAGTGCTGCAGTTTTTACGGAAATTTACAGCGTGGGTTTTCATAATTCTTCACCCAACTTCCTGTTGTTCCTTGCCATTGGTATTCCTGCTTTATGCTTCAGTACAATGTTTCTTGTTCGGCCTTGCACTCCGGCTTCCGGTGAAGATTCTTCTGAAAACAGTCATTTTTTATTCATCCAAGTTGCTAGTGTAGCCTTGGGTTTATACTTACTTGCAACAACAATACTCGACAACTTTGTCCCCATGAATTATACAGTATCATTTGTTATGTTGGCTGTGATGATTCTCCTTCTCTTGGCCCCCCTTGCAATCCCTATAAAGATGACACTGTGCCCCAGAAAAGCATCTGCATCAGAAACACCAGAGCAACATGTTGGATCTTCCGACTTTCTGGTTCAAGATGGCAAGGTGGACAACACAGAACCCTTGCTATCATCTTCATCAACCAGTGGCCTTGGAAGTTTTAATGATGTGGATGGTTCAGCTGAGGTGGCCATGCTTCTCGCTGAGGGTGAGGGGGCAGTGAGGAAGAAGAGAAGGCCCAAGAGAGGGGAAGATTTTAAGTTTACCGAGGCTCTCGTTAAGGCAGATTTCTGGCTACTGTTTTTTGTTTACTTTGTTGGGGTTGGAACAGGGGTTACCGTTCTGAATAATTTGGCTCAGATTGGCATTGCACAAGGTATGGAAGATACCACTGTTTTGCTGTCATTATTCAGCTTTTTCAATTTTGTGGGTCGGCTAGGTGGAGGAGTTGTTTCAGAACATTTTGTCAGGACAAAAACGATTCCAAGGACAATTTGGATGACATGCACGCAGATAATTATGATATTCTTGTACCTTCTCTTTGCATATGCTATCAAGGGAACACTTTATCCTGCAATTGCAGTTCTTGGCATCTGCTATGGCGTGCAATTTTCCATAGTGATTCCCACTGTTTCAGAGCTTTTTGGGTTGAAACACTTTGGTTTGTTGAGCAACTTCATGGGTCTGGGGAATCCACTTGGTGCATCACTTTTCTCGGCTCTTCTAGCAGGACACGTATATGATAACGAGGCAGCAAAACAACATGGCGAAGGCCTCATTGCTTCAGGTGTTGCATGTATTGGTCCAAGTTGTTTTCAGCTAACCTTTTTCACTCTGGCTGGTGTGTGTGTTGCGGGTACTCTCTCCAGCATTATCTTGACTATAAGAATTAAGCCCGTTTACCAAATGCTTTATTCTGGGGGTTCGTTTAAGCTACCTCAAACTTCAGGCCACTAA 1716 0.4464 MLRVKGGKRPPWVGLGAAVWVQICSGNGYTFPLYSHSLKSVLGFNQSQITLLGVANDIGENLGILPGLACNKFPPWLILLIGGLLSFLGFGVLWLAISKTFDCVPFIVLWLALAVATNSCAWLSTAILVTNMRNFPVSRGTVAGVLKGYSGLSAAVFTEIYSVGFHNSSPNFLLFLAIGIPALCFSTMFLVRPCTPASGEDSSENSHFLFIQVASVALGLYLLATTILDNFVPMNYTVSFVMLAVMILLLLAPLAIPIKMTLCPRKASASETPEQHVGSSDFLVQDGKVDNTEPLLSSSSTSGLGSFNDVDGSAEVAMLLAEGEGAVRKKRRPKRGEDFKFTEALVKADFWLLFFVYFVGVGTGVTVLNNLAQIGIAQGMEDTTVLLSLFSFFNFVGRLGGGVVSEHFVRTKTIPRTIWMTCTQIIMIFLYLLFAYAIKGTLYPAIAVLGICYGVQFSIVIPTVSELFGLKHFGLLSNFMGLGNPLGASLFSALLAGHVYDNEAAKQHGEGLIASGVACIGPSCFQLTFFTLAGVCVAGTLSSIILTIRIKPVYQMLYSGGSFKLPQTSGH 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5870g00017 571 Pfam Nodulin-like 11 258 IPR010658 -
Vium5870g00017 571 CDD MFS_Mch1p_like 10 540 - -
Vium5870g00017 571 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 555 - -
Vium5870g00017 571 SUPERFAMILY MFS general substrate transporter 216 552 IPR036259 -
Vium5870g00017 571 Gene3D MFS general substrate transporter like domains 347 554 IPR036259 -
Vium5870g00017 571 SUPERFAMILY MFS general substrate transporter 11 195 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5870g00017 Vium-Chr5870 87933 90966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5870g00017 2 571 Nodulin-like Gene Family AT1G80530 57.343 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5870g00017 - - gmx:100787328 949.503