Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5861g00002 ATGGCTACTCATCTTGCTACAGCAAAGGCCACCGGGACGACGTCGTCTCAGGATAAACGACACCGTTCCATCTTCGATGTTCCGTCGAATTTCTTCGACTCTTCTCGCCTTCTTCCTTCTCCACACTCTTCCGTTTCCAATCACCACACCGTAGACCAAACCCAAACCCTTGAACCCTCCTCAAACGACGTCGTTATTTTTGATGATTCTCAAAACGCTGCAGTTTCCGCGCCTAGGTTGACCTGCAATACCTGCAGAACTCAATTTGATTCCCTCCAAGATCAGCGTTGCCATTTCAAATCCGACATTCATCGGTTCAACGTGAAGCTGACAATTGCGGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTCAAAGACTATGATATGTCAAGTATATCGGGATCAGAAAGTGATGATTCACAAAGTGAAATTGTACTGCATGACAAATCGAGTGAAAATTTTAAACAGAAACTCTTCTTCCTTCTTCAGACAGGACAGAGAGTTTCTGTCTGGAAGTGCTTGATCATGAATGTGACTGAAAATGTATTGTATGATGATGAAAAGGCGGAGAATGACGTTGTTCAGAAGTTGAAATCGCTGACTGCTGAGCCCAGAAACAATACCCAGTTGAGGATTGTTCTGCTTGCATCTGGTGGGCACTTTGCAGGTTGTGTCTTTGATGGTGATGTTGTTGTGGCTCACAAGACATTTCATAGATATGTTGTGCGGGCCAAGGCGGGAAAAAAACAGTCATCTAAAGATGCTTCTGGCAGGTCTATACATTCTGCCGGGGCCTCACTTCGTCGTTATAATGAACTTGCATTAAAGAAGGAAGTGCATGAACTGTTTACAGCTTGGAAACCCTATTTTGATGTCTCCAATTGCGTATTTATTCATGCTCCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGACCATATTTTGGTAATCAGCACTGTACTGTTAGAAACATTGCTTTGAGTGTTCGGAGGCCCACGTTCAGGGAGGTAAAGCGTGTATATAGTCATTTGACTCAGGTAACCTACGAAGGTGATGAGAAGGAAGTTTTACAGAGCAAACAAGAGGATTTGGTATCAGTTCCCATTTCTAAAATAAATGGCAGTCCAATCTCCAACCAAGGGAATGGGGCTGTGTTGCATGACAAAGATAAAGCTGAAGCTTGTTCAAGTAAGAAAAATGATGAACTTTCCATTTCGAGTAATGGAGAAAGTGAGAATGAGCTATCTGGTAAATCAACTCCTTTACATCAGGCAGCCCAATCTGGTGACTCTGTAAAGGTTTTGGAACTCCTGGAACAGGGCTTGGATCCTTGCTCCACAGATGAAAGGGGACGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATAATTTCAGAAGGTTTATGGCATCAAATCTTGACAAATGGGATTGGCATGCTGCCAAAGTACCCAGTGCATTGACCAAAGAAATGGAAGAGTCACAAGCTGCTAAGCAGGCAGAAAAGGATGCTAAGAGAAAAGCAAGAGCAAAGGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCACCTTGCCAAAGAATGATTCCAAAACTGTGGAGAAGCAAGTAACAGCTTCATCATCGATAAAGGGACAATCTCAACTAAAAAGTAGCGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCCGAAAGAGAAAAGCGAGCAGCTGCTGCTGAGAAGAGAATAGCTGCCCTCAATATTCAAGCTAACAGTACAACCGCTGCACCAAGCATGTCAGGGCCTAAAAGTGGATTAGCCGGTGACATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGCAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAAGGACATCCTAGACGATCAATGA 1983 0.4312 MATHLATAKATGTTSSQDKRHRSIFDVPSNFFDSSRLLPSPHSSVSNHHTVDQTQTLEPSSNDVVIFDDSQNAAVSAPRLTCNTCRTQFDSLQDQRCHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDMSSISGSESDDSQSEIVLHDKSSENFKQKLFFLLQTGQRVSVWKCLIMNVTENVLYDDEKAENDVVQKLKSLTAEPRNNTQLRIVLLASGGHFAGCVFDGDVVVAHKTFHRYVVRAKAGKKQSSKDASGRSIHSAGASLRRYNELALKKEVHELFTAWKPYFDVSNCVFIHAPSSSRQLLYDGERPYFGNQHCTVRNIALSVRRPTFREVKRVYSHLTQVTYEGDEKEVLQSKQEDLVSVPISKINGSPISNQGNGAVLHDKDKAEACSSKKNDELSISSNGESENELSGKSTPLHQAAQSGDSVKVLELLEQGLDPCSTDERGRTPYMLAHDKEVRNNFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEATLPKNDSKTVEKQVTASSSIKGQSQLKSSVQLSKEDQIRMAQAAEREKRAAAAEKRIAALNIQANSTTAAPSMSGPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKDILDDQ 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5861g00002 660 MobiDBLite consensus disorder prediction 1 20 - -
Vium5861g00002 660 MobiDBLite consensus disorder prediction 41 60 - -
Vium5861g00002 660 Pfam Bacteroidetes VLRF1 release factor 219 357 IPR041175 -
Vium5861g00002 660 MobiDBLite consensus disorder prediction 540 566 - -
Vium5861g00002 660 Pfam Vms1-associating treble clef domain 623 655 IPR041540 -
Vium5861g00002 660 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Vium5861g00002 660 SUPERFAMILY Ankyrin repeat 427 478 IPR036770 -
Vium5861g00002 660 Coils Coil 572 601 - -
Vium5861g00002 660 MobiDBLite consensus disorder prediction 526 566 - -
Vium5861g00002 660 ProSitePatterns Zinc finger C2H2 type domain signature. 82 104 IPR013087 -
Vium5861g00002 660 Gene3D - 390 487 IPR036770 -
Vium5861g00002 660 MobiDBLite consensus disorder prediction 407 435 - -
Vium5861g00002 660 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 658 IPR047139 -
Vium5861g00002 660 MobiDBLite consensus disorder prediction 404 436 - -
Vium5861g00002 660 Coils Coil 501 539 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5861g00002 19 607 C2H2 Transcription Factor Family AT1G01930 51.713 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5861g00002 K26089 - gmx:100527709 1011.91