Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5860g00001 ATGAGAGAGCCGCAGAACGACACCCTGGCGACCCAACTAACAACCACCAACGACGACGTGCCATCTGCCGTCGTTTTGTTCGGGAAGTACGAGTTGAAGAGGTTACTGGGAGTCGGCGCGTTCGGCAAGGTGTACCACGCCACAACCGCCGACACGCGCCAGAGCGTGGCGGTGAAGGCCGTCAGCAAAAGCAAGGTCTTAAACGGAGGTTTTGCTGCCAACGTCGAACGCGAGATCTCTATCATGCGCCGCCTCCACCACTCCAACATCATTGACCTCTTCGAAGTACTCGCGACGAAGACCAAAATCTACTTCGTCATGGAGTTTGCCGCCGGCGGCGAACTCTTCCACGCGGTAGCCAGAAAGGGGCGCCTCGAGGAGGAGGACGCCAGGTTTTACTTCCGGCAACTCATCTCCGCCTTGAAACACTGCCACTCGCTCGGCGTGTTCCACCGCGACCTCAAGCTCGATAATTTGCTGCTCGACGAGAACGGGAATTTGAAAGTCTCCGATTTCGGGTTGAGTGCAGTCACGGGTCAGATCCGACCCGACGGGTTGTTACACACTATTTGTGGAACCCCTACCTACGTGGCACCCGAGATTCTGTTGAAGAGAGGCTATGATGGTGCGAAAGTAGATCTGTGGTCGTGTGGCGTCGTTTTGTTTGCGCTCACCGCAGGTTATTTACCATTCAATGATTGCAACGTCACCGTTTTATTCAGAAAGATTTACCGCGGTCAATTCCGGTTCCCTAGGTGGATGTCCAGTGATCTGAGGTACCTCTTATCACGCTTGCTTGACACAAATCCCGAAACCAGGATTACCATTGATGAGATCTACCAAGACACGTGGTTCAACGCGGGTGAGGACCAGTACGAACCGGTTCGGGTCAAGGAGAGTGAATGCGTATGCGGGGATAGAGGAACCGGGTTCAAGTCGCTGAACGCGTTCGACTTAATTTCTTTTTCGACAGGTTTGGACATGTCGGGTCTTTTCGAGGATCCGAACGGGTCGGATTCCGTGGAACGGGTTGTTTCCGCCGCGTTACCAGAGAATATTATAGAGAGAGTGGAGGCGGCAGCGGAGGATGGGAAGGTGGTGGTAAAGAGGGAGAGAAACGGTGGTGGAGCGAATTTGGAAGGGCAGGACGGTAATTTGATAGGTCTCGTAGTAGTTTACCGGTTAACGGAAGAGCTTGTAGTGGTTGAAATGACGAGAAGTGAGAAGGGAGGGGAATCTGGCGCGAAGTTTTGGAAAGATAAACTGCGCCCTCTGCTTATTGAATTGGCAGGTGAACGGGAAACGCCGGTTTCCGGTGACTTCTGTAACATATAG 1335 0.5318 MREPQNDTLATQLTTTNDDVPSAVVLFGKYELKRLLGVGAFGKVYHATTADTRQSVAVKAVSKSKVLNGGFAANVEREISIMRRLHHSNIIDLFEVLATKTKIYFVMEFAAGGELFHAVARKGRLEEEDARFYFRQLISALKHCHSLGVFHRDLKLDNLLLDENGNLKVSDFGLSAVTGQIRPDGLLHTICGTPTYVAPEILLKRGYDGAKVDLWSCGVVLFALTAGYLPFNDCNVTVLFRKIYRGQFRFPRWMSSDLRYLLSRLLDTNPETRITIDEIYQDTWFNAGEDQYEPVRVKESECVCGDRGTGFKSLNAFDLISFSTGLDMSGLFEDPNGSDSVERVVSAALPENIIERVEAAAEDGKVVVKRERNGGGANLEGQDGNLIGLVVVYRLTEELVVVEMTRSEKGGESGAKFWKDKLRPLLIELAGERETPVSGDFCNI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5860g00001 444 CDD CIPK_C 315 426 - -
Vium5860g00001 444 FunFam Aurora kinase A 24 113 - -
Vium5860g00001 444 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Vium5860g00001 444 Pfam NAF domain 312 369 IPR004041 GO:0007165
Vium5860g00001 444 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Vium5860g00001 444 SUPERFAMILY Protein kinase-like (PK-like) 26 292 IPR011009 -
Vium5860g00001 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 25 407 - -
Vium5860g00001 444 ProSiteProfiles Protein kinase domain profile. 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5860g00001 444 SMART serkin_6 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5860g00001 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vium5860g00001 444 Gene3D Kinase associated domain 1, KA1 310 430 - -
Vium5860g00001 444 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5860g00001 444 FunFam CAMK family protein kinase 24 302 - -
Vium5860g00001 444 Gene3D Transferase(Phosphotransferase) domain 1 23 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5860g00001 Vium-Chr5860 1877 3848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5860g00001 25 432 CBL-interacting serine-threonine protein kinases AT2G30360 55.952 2.23e-157 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium5860g00001 Pkinase 1.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5860g00001 - K12761 gmx:100788245 690.263