Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5854g00009 ATGGATATGTACATTCGAGTTAAACGTAGTAAGACAACATACTTCATCCGGTGCAAGGCATCTGATAAAATTATTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAACCAACTAATAATCAACGGTTAATTCTACCTGGTACAGGGGAAGTATTAGAAGACTCTAAGACTTTGGCAGATCAAAAGGTAGAGAATGATGCTGTTGTAGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCTAACGATTTCTACCAAGCTCGGGATGCAGATGGTGCCAGTTGGTAA 312 0.3974 MDMYIRVKRSKTTYFIRCKASDKIIDIKQKLQELVDQPTNNQRLILPGTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGASW 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5854g00009 103 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Vium5854g00009 103 PANTHER OS03G0364000 PROTEIN 1 101 - -
Vium5854g00009 103 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Vium5854g00009 103 Gene3D - 1 92 - -
Vium5854g00009 103 SMART ubq_7 3 75 IPR000626 GO:0005515
Vium5854g00009 103 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5854g00009 Vium-Chr5854 59298 64599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5854g00009 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 8.56e-07 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5854g00009 K03873 - gmx:100499885 198.364